Gm22973 (predicted gene, 22973) - Rat Genome Database

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Gene: Gm22973 (predicted gene, 22973) Mus musculus
Analyze
Symbol: Gm22973
Name: predicted gene, 22973
RGD ID: 14996224
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,087,121 - 59,087,311 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,087,121 - 59,087,311 (+)EnsemblGRCm39 Ensembl
GRCm381259,040,335 - 59,040,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,040,335 - 59,040,525 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22973
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,087,121 - 59,087,311 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1259,087,121 - 59,087,311 (+)EnsemblGRCm39 Ensembl
GRCm381259,040,335 - 59,040,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,040,335 - 59,040,525 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12C1NCBI
RNU2-64P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38373,110,994 - 73,111,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl373,110,992 - 73,111,182 (+)EnsemblGRCh38hg38GRCh38
GRCh37373,160,145 - 73,160,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p13NCBI
CHM1_1373,113,520 - 73,113,705 (+)NCBICHM1_1
T2T-CHM13v2.0373,152,509 - 73,152,694 (+)NCBIT2T-CHM13v2.0
Rnu2-64
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,871,061 - 186,871,251 (-)NCBIGRCr8
mRatBN7.22184,182,219 - 184,182,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,182,219 - 184,182,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2198,772,287 - 198,772,477 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q34NCBI
LOC119869927
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha117,928,230 - 17,928,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0116,830,068 - 16,830,256 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl116,830,068 - 16,830,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1116,865,477 - 16,865,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0116,786,241 - 16,786,429 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0117,047,804 - 17,047,992 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22973
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:61
Interacting mature miRNAs:61
Transcripts:ENSMUST00000083298
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000083298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1259,087,121 - 59,087,311 (+)Ensembl
GRCm38.p6 Ensembl1259,040,335 - 59,040,525 (+)Ensembl
RefSeq Acc Id: XR_004937896
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391259,087,121 - 59,087,311 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065232 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083298 ENTREZGENE
MGD MGI:5452750 ENTREZGENE
NCBI Gene Gm22973 ENTREZGENE
PhenoGen Gm22973 PhenoGen