RN7SKP36 (RN7SK pseudogene 36) - Rat Genome Database

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Gene: RN7SKP36 (RN7SK pseudogene 36) Homo sapiens
Analyze
Symbol: RN7SKP36
Name: RN7SK pseudogene 36
RGD ID: 10399633
HGNC Page HGNC:45760
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 36
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3847,112,164 - 7,112,399 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl47,112,088 - 7,112,399 (-)EnsemblGRCh38hg38GRCh38
GRCh3747,113,891 - 7,114,126 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4p16.1NCBI
CHM1_147,112,283 - 7,112,518 (-)NCBICHM1_1
T2T-CHM13v2.047,084,047 - 7,084,282 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in RN7SKP36
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:378
Count of miRNA genes:351
Interacting mature miRNAs:377
Transcripts:ENST00000363997
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 1 6 8 4 7 7 2 1 5
Below cutoff 46 53 27 7 41 3 103 38 100 8 36 26 4 22 63 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363997
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl47,112,088 - 7,112,399 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP36 COSMIC
Ensembl Genes ENSG00000200867 Ensembl
GTEx ENSG00000200867 GTEx
HGNC ID HGNC:45760 ENTREZGENE
Human Proteome Map RN7SKP36 Human Proteome Map
NCBI Gene RN7SKP36 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP36  RN7SK pseudogene 36    RNA, 7SK small nuclear pseudogene 36  Symbol and/or name change 5135510 APPROVED