LLPHP2 (LLPH pseudogene 2) - Rat Genome Database

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Gene: LLPHP2 (LLPH pseudogene 2) Homo sapiens
Analyze
Symbol: LLPHP2
Name: LLPH pseudogene 2
RGD ID: 10399440
HGNC Page HGNC:50492
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 2; LLP homolog, long-term synaptic facilitation pseudogene 2
Related Functional Gene: LLPH  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382125,762,639 - 25,763,381 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2125,762,938 - 25,763,333 (-)EnsemblGRCh38hg38GRCh38
GRCh372127,134,950 - 27,135,692 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map21q21.3NCBI
CHM1_12126,695,865 - 26,696,260 (-)NCBICHM1_1
T2T-CHM13v2.02124,120,194 - 24,120,936 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:98
Interacting mature miRNAs:99
Transcripts:ENST00000436405
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 47 22 91 16 130 10 109 20 84 22 119 94 6 34 70 2
Below cutoff 715 538 570 183 287 96 1118 458 712 71 538 526 87 385 683

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000436405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2125,762,938 - 25,763,333 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC LLPHP2 COSMIC
Ensembl Genes ENSG00000235514 Ensembl
GTEx ENSG00000235514 GTEx
HGNC ID HGNC:50492 ENTREZGENE
Human Proteome Map LLPHP2 Human Proteome Map
NCBI Gene LLPHP2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 LLPHP2  LLPH pseudogene 2  LLPHP2  LLP homolog, long-term synaptic facilitation pseudogene 2  Symbol and/or name change 5135510 APPROVED
2016-06-30 LLPHP2  LLP homolog, long-term synaptic facilitation pseudogene 2    LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 2  Symbol and/or name change 5135510 APPROVED