RN7SKP19 (RN7SK pseudogene 19) - Rat Genome Database

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Gene: RN7SKP19 (RN7SK pseudogene 19) Homo sapiens
Analyze
Symbol: RN7SKP19
Name: RN7SK pseudogene 19
RGD ID: 10398949
HGNC Page HGNC:45743
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 19
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,191,604 - 73,191,855 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,191,604 - 73,191,855 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,657,287 - 73,657,538 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p31.1NCBI
CHM1_1173,772,706 - 73,772,957 (-)NCBICHM1_1
T2T-CHM13v2.0173,033,402 - 73,033,653 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:229
Interacting mature miRNAs:239
Transcripts:ENST00000516016
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage entire extraembryonic component
High
Medium
Low 1 10 1 21 1 2 1 3 10
Below cutoff 8 1 61 2 33 2 9 8 8 49 62 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516016
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl173,191,604 - 73,191,855 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP19 COSMIC
Ensembl Genes ENSG00000251825 Ensembl, ENTREZGENE
GTEx ENSG00000251825 GTEx
HGNC ID HGNC:45743 ENTREZGENE
Human Proteome Map RN7SKP19 Human Proteome Map
NCBI Gene RN7SKP19 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP19  RN7SK pseudogene 19    RNA, 7SK small nuclear pseudogene 19  Symbol and/or name change 5135510 APPROVED