RN7SKP224 (RN7SK pseudogene 224) - Rat Genome Database

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Gene: RN7SKP224 (RN7SK pseudogene 224) Homo sapiens
Analyze
Symbol: RN7SKP224
Name: RN7SK pseudogene 224
RGD ID: 10398891
HGNC Page HGNC:45948
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Previously known as: RNA, 7SK small nuclear pseudogene 224
Related Functional Gene: RN7SK  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38248,217,576 - 48,217,814 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl248,217,575 - 48,217,899 (+)EnsemblGRCh38hg38GRCh38
GRCh37248,444,715 - 48,444,953 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p16.3NCBI
CHM1_1248,374,901 - 48,375,139 (+)NCBICHM1_1
T2T-CHM13v2.0248,223,541 - 48,223,779 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:214
Count of miRNA genes:203
Interacting mature miRNAs:213
Transcripts:ENST00000364140
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 12 4 7 5 45 5 63 6 10 8 15 40 1 1
Below cutoff 86 27 49 12 121 13 124 60 87 54 100 129 8 9 21 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364140
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl248,217,575 - 48,217,899 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SKP224 COSMIC
Ensembl Genes ENSG00000201010 Ensembl
GTEx ENSG00000201010 GTEx
HGNC ID HGNC:45948 ENTREZGENE
Human Proteome Map RN7SKP224 Human Proteome Map
NCBI Gene RN7SKP224 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 RN7SKP224  RN7SK pseudogene 224    RNA, 7SK small nuclear pseudogene 224  Symbol and/or name change 5135510 APPROVED