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Gene: Zcchc10 (zinc finger CCHC-type containing 10) Chinchilla lanigera

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Symbol:

Zcchc10

Name:

zinc finger CCHC-type containing 10

RGD ID:

10262063

Description:

ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger CCHC domain-containing protein 10; zinc finger, CCHC domain containing 10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	4,342,429 - 4,351,935 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	4,342,429 - 4,351,935 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Zcchc10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	4,342,429 - 4,351,935 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	4,342,429 - 4,351,935 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZCCHC10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	132,996,985 - 133,026,549 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	132,996,985 - 133,026,604 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	132,332,677 - 132,362,241 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	132,360,576 - 132,390,139 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	132,360,577 - 132,390,139	NCBI
Celera	5	128,462,702 - 128,492,173 (-)	NCBI		Celera
Cytogenetic Map	5	q31.1	NCBI
HuRef	5	127,524,435 - 127,554,349 (-)	NCBI		HuRef
CHM1_1	5	131,765,980 - 131,795,507 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	133,516,746 - 133,546,308 (-)	NCBI		T2T-CHM13v2.0

Zcchc10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	53,215,516 - 53,224,128 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	53,215,506 - 53,224,128 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	53,324,689 - 53,333,301 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	53,324,679 - 53,333,301 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	53,138,191 - 53,146,803 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	53,168,112 - 53,176,724 (+)	NCBI		MGSCv36	mm8
Celera	11	57,904,407 - 57,913,019 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	31.92	NCBI

Zcchc10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	37,971,459 - 37,981,860 (+)	NCBI		GRCr8
mRatBN7.2	10	37,470,628 - 37,481,027 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	10	42,163,563 - 42,174,238 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	41,653,596 - 41,664,271 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	37,157,312 - 37,167,987 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	38,664,020 - 38,674,419 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	38,443,476 - 38,456,061 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	38,768,562 - 38,781,151 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	38,774,991 - 38,787,578 (+)	NCBI
Celera	10	36,818,053 - 36,828,346 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

ZCCHC10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	128,303,505 - 128,333,276 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	126,443,068 - 126,472,837 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	128,408,266 - 128,437,925 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	134,564,911 - 134,594,353 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	134,564,911 - 134,594,353 (-)	Ensembl	panpan1.1		panPan2

ZCCHC10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	21,269,879 - 21,290,673 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	21,271,497 - 21,291,094 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	20,072,606 - 20,093,557 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	22,052,579 - 22,073,528 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	22,052,704 - 22,073,918 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	20,770,614 - 20,791,340 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	20,618,443 - 20,639,163 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	21,260,863 - 21,281,797 (-)	NCBI		UU_Cfam_GSD_1.0

Zcchc10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	115,178,813 - 115,199,580 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936647	2,181,713 - 2,202,092 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936647	2,181,694 - 2,202,271 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZCCHC10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	135,305,852 - 135,328,527 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	135,305,854 - 135,328,718 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	140,826,470 - 140,847,885 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZCCHC10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	35,808,799 - 35,840,692 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	35,808,801 - 35,840,207 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	42,101,395 - 42,132,844 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zcchc10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	39,094,213 - 39,115,202 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013508415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01008102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01008103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01008104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01008105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01171195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01053116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018618 ⟹ ENSCLAP00000018437

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955408	4,342,429 - 4,351,935 (-)	Ensembl

RefSeq Acc Id:

XM_013508415 ⟹ XP_013363869

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	4,342,429 - 4,351,935 (-)	NCBI

Sequence:

show sequence

CCACAACCGGCGACGCCACGGCCCGCCCCGCCCCCCAGGCCTGCAGCCCCGCCGGCCCCGCCCA
CGCGAAGGCCCGAGGCGCGAAGTCCCCGCCCCCTTCCCGGAGTCTCCCGAAAGTCCGCGCGGCA
GGCTGGGCCGCGCTAAGATGGCGACTCCCATGCATCGGCTCATCGCGCGGAGACGAGCTGAAGC
AAATAAGCAACATGTAAGATGTCAGAAATGCTTGGAATTTGGACATTGGACTTATGAATGCACT
GGGAAAAGAAAATACCTACATAGGCCCTCAAGAACAGCAGAACTAAAGAAAGCTTTAAAAGAAA
AAGAAAATAGATTATTATTGCAGCAAAGCATTGGAGAAACTAATGTAGAAAGAAAGACCAAGAA
AAAAAGGGCCAAGAGTGTAACTAGTTCCAGTAGCGACAGCAGTGACAGTTCAGCCAGCGACTCT
TCATCGGACAGTGAAGACATTTCTACCTCCTCCTCCTCAGAGGACAGCGACTCCGAGGAGAGCT
CGTCCAGCTCGTCGTCCTCTGCCTCCTCCTCAACCTCTTCCTCCTCCTCAGACTCGGACTGGGA
CTCCAGCTCTGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAGAGAGCAGCTCTGAGGAGGAG
CCCCTGAGGAAGAGGAAGAAGAAATAGAGTTTCCCATCCATATTGGACCAATGAACCGAAAATG
CCAACGTGATTCTCAGAAGAGAATTTAGACAATATTAAAGCCAAATGGATTAATTGTTCAGAAT
TTCTAGAGTTCAAAAGTTTCTAAGTGTTTTACATTGTAAAAGCATAAAAAGCATTAATAATGAG
TTATATATCTATATGAAGACTTTTATTTTGGAAGTGAATCTTTTTTTTTAATCTTTAAAAGGTA
TCTCTGGAATTTAAAACTAAAATCCAGCAAATCTGTTTCTGTGATGAAACTTATTTTTTCTCCC
TGTGAAGTGAATGCCATGCTTTGTTATATGTTAATGGTATGTATTGGACAGGTTTTCAGGATAA
TTCCTCAGCATATCTGTAAGTGAGTTTCTAACATTGTATAGGAATGTTAAACTGGTCAGCTGTG
TTACTATGTAAACTTAGAACATTGTTACTAAAAACTTCGGAGTTTTCCTACTGTTAATAAATGT
ACTCTATTTTTATGTTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013363869	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018437
	ENSCLAP00000018437.1

RefSeq Acc Id:	XP_013363869 ⟸ XM_013508415
- Sequence:	show sequence MATPMHRLIARRRAEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLL LQQSIGETNVERKTKKKRAKSVTSSSSDSSDSSASDSSSDSEDISTSSSSEDSDSEESSSSSSS SASSSTSSSSSDSDWDSSSVSSSSSSSSSTESSSEEEPLRKRKKK hide sequence

Ensembl Acc Id:

ENSCLAP00000018437 ⟸ ENSCLAT00000018618

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012644	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018618	ENTREZGENE
	ENSCLAT00000018618.1	UniProtKB/TrEMBL
InterPro	Znf_CCHC_sf	UniProtKB/TrEMBL
NCBI Gene	Zcchc10	ENTREZGENE
PANTHER	PTHR13491	UniProtKB/TrEMBL
	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 10	UniProtKB/TrEMBL
Pfam	zf-CCHC_3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57756	UniProtKB/TrEMBL
UniProt	A0A8C2YRR2_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Zcchc10	zinc finger CCHC-type containing 10		zinc finger, CCHC domain containing 10	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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