Gm22496 (predicted gene, 22496) - Rat Genome Database

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Gene: Gm22496 (predicted gene, 22496) Mus musculus
Analyze
Symbol: Gm22496
Name: predicted gene, 22496
RGD ID: 10001809
MGI Page MGI
Description: ASSOCIATED WITH Angelman syndrome (ortholog); autistic disorder (ortholog); chromosome 15q11.2 deletion syndrome (ortholog); INTERACTS WITH aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog); valproic acid (ortholog)
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: uncharacterized protein Gm22496
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39758,997,085 - 58,997,172 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl758,997,085 - 58,997,172 (-)EnsemblGRCm39 Ensembl
GRCm38759,347,337 - 59,347,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,347,337 - 59,347,424 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Gm22496
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39758,997,085 - 58,997,172 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl758,997,085 - 58,997,172 (-)EnsemblGRCm39 Ensembl
GRCm38759,347,337 - 59,347,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,347,337 - 59,347,424 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7B5NCBI
SNORD115-35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381525,234,247 - 25,234,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1525,234,247 - 25,234,328 (+)EnsemblGRCh38hg38GRCh38
GRCh371525,479,394 - 25,479,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361523,030,487 - 23,030,568 (+)NCBINCBI36Build 36hg18NCBI36
Celera153,641,418 - 3,641,499 (+)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef153,603,880 - 3,603,961 (+)NCBIHuRef
CHM1_11525,428,908 - 25,428,989 (+)NCBICHM1_1
T2T-CHM13v2.01522,970,917 - 22,970,998 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm22496
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:131
Interacting mature miRNAs:138
Transcripts:ENSMUST00000104493
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_146600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC167971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,997,085 - 58,997,172 (-)Ensembl
GRCm38.p6 Ensembl759,347,337 - 59,347,424 (-)Ensembl
RefSeq Acc Id: NR_146600
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,997,085 - 58,997,172 (-)NCBI
GRCm38759,347,337 - 59,347,424 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077681 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104493 ENTREZGENE
MGD MGI:5452273 ENTREZGENE
NCBI Gene Gm22496 ENTREZGENE
PhenoGen Gm22496 PhenoGen
RNAcentral URS000069B81F RNACentral