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ONTOLOGY REPORT - ANNOTATIONS

Term:protein localization to chromatin
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Accession:GO:0071168 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into chromatin.
Synonyms:exact_synonym: protein localisation to chromatin

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protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G BRD2 bromodomain containing 2 involved_in ISO (PMID:28262505)
(MGI:6106706|PMID:28262505)		 UniProt PMID:28262505 MGI:6106706 NCBI chr17:39,113,519...39,126,267 JBrowse link
G BRD2 bromodomain containing 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr17:39,114,700...39,122,051 JBrowse link
G BRD3 bromodomain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,075,123...4,112,727
Ensembl chr12:4,089,621...4,109,441 		JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:15616592) MGI PMID:15616592 NCBI chr 6:9,866,715...9,915,655
Ensembl chr 6:9,866,534...9,914,682 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in ISO (PMID:28242692) ARUK-UCL PMID:28242692 NCBI chr 8:21,370,334...21,390,036
Ensembl chr 8:21,373,968...21,387,698 		JBrowse link
G DAXX death domain associated protein involved_in ISO (MGI:5882889|PMID:17081986)
(PMID:17081986)		 CAFA PMID:17081986 MGI:5882889 NCBI chr17:38,754,227...38,758,714
Ensembl chr17:38,754,280...38,759,071 		JBrowse link
G ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22101327) Ensembl
MGI		 PMID:22101327 GO_REF:0000107 NCBI chr 8:25,885,823...25,919,863
Ensembl chr 8:25,887,309...25,916,630 		JBrowse link
G ESR1 estrogen receptor 1 involved_in ISO (PMID:20388878) BHF-UCL PMID:20388878 NCBI chr13:79,153,418...79,554,552
Ensembl chr13:79,270,265...79,554,549 		JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18311137) Ensembl
MGI		 PMID:18311137 GO_REF:0000107 NCBI chr21:117,380,518...117,515,224
Ensembl chr21:117,380,361...117,421,573 		JBrowse link
G FAM47E family with sequence similarity 47 member E involved_in ISO (PMID:33376131) UniProt PMID:33376131 NCBI chr 7:24,750,287...24,782,574 JBrowse link
G FAM47E family with sequence similarity 47 member E involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 7:24,755,448...24,782,779 JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in ISO (PMID:20363964) UniProt PMID:20363964 NCBI chr 7:55,974,770...56,096,214
Ensembl chr 7:55,990,621...56,094,110 		JBrowse link
G LEMD2 LEM domain nuclear envelope protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:38,291,100...38,309,134
Ensembl chr17:38,291,217...38,307,745 		JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:32,137,983...32,181,187
Ensembl chr 2:32,138,173...32,181,179 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
G MMS22L MMS22 like, DNA repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:76,611,574...76,750,893
Ensembl chr13:76,611,517...76,750,616 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G MSH2 mutS homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:34874266) UniProt PMID:34874266 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G RAD21 RAD21 cohesin complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:111,486,356...111,515,641
Ensembl chr 8:111,486,048...111,507,729 		JBrowse link
G TONSL tonsoku like, DNA repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,641,514...138,657,429
Ensembl chr 8:138,641,575...138,656,673 		JBrowse link
G WAPL WAPL cohesin release factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:45,335,423...45,420,785
Ensembl chr 9:45,334,981...45,420,787 		JBrowse link
G ZMYND8 zinc finger MYND-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:16,547,144...16,696,729
Ensembl chr 2:16,622,702...16,696,878 		JBrowse link
establishment of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCFL CCCTC-binding factor like involved_in ISO (PMID:18765639) UniProt PMID:18765639 NCBI chr 2:6,592,924...6,623,787 JBrowse link
G H1-5 H1.5 linker histone, cluster member involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:44,663,976...44,664,753
Ensembl chr17:44,664,042...44,664,719 		JBrowse link
G H2AFY core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,113,212...38,178,227
Ensembl chr23:38,113,195...38,168,382 		JBrowse link
G H2AFY2 H2A histone family member Y2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:61,194,887...61,254,361
Ensembl chr 9:61,195,431...61,231,228 		JBrowse link
G LOC103245755 WW domain-binding protein 2-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:40,120,432...40,122,225 JBrowse link
G LRWD1 leucine rich repeats and WD repeat domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr28:10,748,367...10,756,304
Ensembl chr28:10,744,614...10,756,303 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G WBP2 WW domain binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:45,821,875...45,836,558
Ensembl chr16:45,821,967...45,835,530 		JBrowse link
mitotic cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NIPBL NIPBL cohesin loading factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
negative regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 involved_in ISO (PMID:14701750) UniProt PMID:14701750 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 involved_in ISO (PMID:35013556) UniProt PMID:35013556 NCBI chr 6:3,768,100...3,797,377 JBrowse link
G RNF4 ring finger protein 4 involved_in ISO (PMID:35013556) UniProt PMID:35013556 NCBI chr27:46,245,786...46,290,671 JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:27912097) UniProt PMID:27912097 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SPI1 Spi-1 proto-oncogene involved_in ISO (MGI:6381024|PMID:30911105) ARUK-UCL PMID:30911105 MGI:6381024 NCBI chr 1:17,935,037...17,961,638
Ensembl chr 1:17,935,922...17,961,717 		JBrowse link
G VCP valosin containing protein involved_in ISO (PMID:35013556) UniProt PMID:35013556 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
positive regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 involved_in ISO (PMID:29335245) UniProt PMID:29335245 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (MGI:6357632|PMID:31399344)
(PMID:31399344)		 UniProt PMID:31399344 MGI:6357632 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:74,686,102...74,770,496
Ensembl chr24:74,686,111...74,770,874 		JBrowse link
protein localization to heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103224842 periphilin-1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:82,584,913...82,586,059 JBrowse link
G PPHLN1 periphilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:38,563,818...38,684,210
Ensembl chr11:38,563,866...38,684,030 		JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:17,957,264...18,020,887
Ensembl chr22:17,960,845...18,020,653 		JBrowse link
protein localization to pericentric heterochromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JARID2 jumonji and AT-rich interaction domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27892467) Ensembl
MGI		 PMID:27892467 GO_REF:0000107 NCBI chr17:56,651,752...56,928,650
Ensembl chr17:56,651,596...56,928,126 		JBrowse link
regulation of cohesin loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WAPL WAPL cohesin release factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:45,335,423...45,420,785
Ensembl chr 9:45,334,981...45,420,787 		JBrowse link
regulation of protein localization to chromatin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:24843002) UniProt PMID:24843002 NCBI chr22:8,421,178...8,567,221
Ensembl chr22:8,420,960...8,567,201 		JBrowse link
G VCP valosin containing protein involved_in ISO (PMID:32152270) UniProt PMID:32152270 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G VCPIP1 valosin containing protein interacting protein 1 involved_in ISO (PMID:32649882) UniProt PMID:32649882 NCBI chr 8:62,506,541...62,546,238
Ensembl chr 8:62,510,808...62,546,229 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17106
    localization 5438
      macromolecule localization 3025
        cellular macromolecule localization 2584
          protein localization 2572
            protein localization to organelle 1042
              protein localization to chromosome 121
                protein localization to chromatin 48
                  cohesin loading + 2
                  establishment of protein localization to chromatin + 9
                  negative regulation of protein localization to chromatin + 6
                  positive regulation of protein localization to chromatin + 3
                  protein localization to CENP-A containing chromatin 0
                  protein localization to euchromatin + 0
                  protein localization to heterochromatin + 4
                  regulation of protein localization to chromatin + 10
paths to the root