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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix structural constituent
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Accession:GO:0005201 term browser browse the term
Definition:The action of a molecule that contributes to the structural integrity of the extracellular matrix.
Comment:Extracellular matrix glycoproteins may be annotated to this term. PMID:24443019
Synonyms:narrow_synonym: extracellular matrix glycoprotein
 broad_synonym: core extracellular matrix;   core matrisome

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extracellular matrix structural constituent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain enables IEA InterPro GO_REF:0000002 NCBI chr20:30,284,471...30,508,660
Ensembl chr20:30,284,447...30,508,658 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain enables IEA InterPro GO_REF:0000002 NCBI chr17:38,882,591...38,912,602
Ensembl chr17:38,882,745...38,911,625 		JBrowse link
G COL1A1 collagen type I alpha 1 chain enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:43,134,648...43,152,313
Ensembl chr16:43,134,779...43,150,930 		JBrowse link
G COL1A2 collagen type I alpha 2 chain enables IEA InterPro GO_REF:0000002 NCBI chr21:54,602,780...54,639,832
Ensembl chr21:54,602,398...54,632,780 		JBrowse link
G COL24A1 collagen type XXIV alpha 1 chain enables IEA InterPro GO_REF:0000002 NCBI chr20:47,260,635...47,650,408
Ensembl chr20:47,261,261...47,649,269 		JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:25,272,617...25,431,308
Ensembl chr12:25,272,609...25,429,086 		JBrowse link
G COL2A1 collagen type II alpha 1 chain enables IEA InterPro GO_REF:0000002 NCBI chr11:44,196,213...44,227,718
Ensembl chr11:44,196,094...44,227,468 		JBrowse link
G COL3A1 collagen type III alpha 1 chain enables ISO (PMID:7487954), (PMID:9036918) UniProt PMID:7487954 PMID:9036918 NCBI chr10:74,455,133...74,493,392 JBrowse link
G COL3A1 collagen type III alpha 1 chain enables IEA Ensembl GO_REF:0000107 Ensembl chr10:74,455,068...74,484,445 JBrowse link
G COL4A1 collagen type IV alpha 1 chain enables IEA InterPro GO_REF:0000002 NCBI chr 3:88,410,800...88,564,191
Ensembl chr 3:88,412,168...88,564,057 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain enables IEA InterPro GO_REF:0000002 NCBI chr 3:88,564,328...88,760,191
Ensembl chr 3:88,563,903...88,760,411 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain enables IEA InterPro GO_REF:0000002 NCBI chr10:113,183,843...113,338,230
Ensembl chr10:113,257,483...113,335,312 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr10:113,028,552...113,183,240
Ensembl chr10:113,028,552...113,165,958 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain enables IEA InterPro GO_REF:0000002 Ensembl chr  X:96,492,556...96,573,108 JBrowse link
G COL4A6 collagen type IV alpha 6 chain enables IEA InterPro GO_REF:0000002 NCBI chr  X:96,012,442...96,307,911 JBrowse link
G COL5A1 collagen type V alpha 1 chain enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:3,301,643...3,507,300
Ensembl chr12:3,301,175...3,459,607 		JBrowse link
G COL5A2 collagen type V alpha 2 chain enables IEA InterPro GO_REF:0000002 NCBI chr10:74,509,704...74,659,251
Ensembl chr10:74,507,772...74,659,366 		JBrowse link
G COL5A3 collagen type V alpha 3 chain enables IEA InterPro GO_REF:0000002 NCBI chr 6:9,033,298...9,092,061
Ensembl chr 6:9,033,287...9,091,826 		JBrowse link
G COMP cartilage oligomeric matrix protein ISO RGD PMID:12225811 RGD:1298778 NCBI chr 6:17,246,617...17,255,561
Ensembl chr 6:17,246,762...17,255,126 		JBrowse link
G FBLN1 fibulin 1 enables ISO (PMID:2269669) UniProt PMID:2269669 NCBI chr19:27,962,669...28,061,356
Ensembl chr19:27,962,642...28,061,364 		JBrowse link
G FBN1 fibrillin 1 enables ISO (PMID:3536967) UniProt PMID:3536967 NCBI chr26:34,637,916...34,877,499
Ensembl chr26:34,638,838...34,879,217 		JBrowse link
G FGA fibrinogen alpha chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:101,127,554...101,134,881
Ensembl chr 7:101,125,791...101,134,405 		JBrowse link
G FGL1 fibrinogen like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:15,962,625...16,016,118
Ensembl chr 8:15,962,053...15,982,336 		JBrowse link
G FN1 fibronectin 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:101,177,867...101,254,613
Ensembl chr10:101,176,789...101,254,633 		JBrowse link
G LAMA1 laminin subunit alpha 1 enables ISO (PMID:11984530) MGI PMID:11984530 NCBI chr18:65,996,233...66,162,510 JBrowse link
G LAMA2 laminin subunit alpha 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:44,074,128...44,688,187
Ensembl chr13:44,073,525...44,531,889 		JBrowse link
G LAMB1 laminin subunit beta 1 enables ISO (PMID:16289578) HGNC-UCL PMID:16289578 NCBI chr21:76,829,287...76,914,348
Ensembl chr21:76,829,443...76,914,324 		JBrowse link
G LAMB2 laminin subunit beta 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:10,523,763...10,535,733
Ensembl chr22:10,523,717...10,536,207 		JBrowse link
G LAMC1 laminin subunit gamma 1 enables IEA Ensembl GO_REF:0000107 NCBI chr25:46,233,409...46,354,060
Ensembl chr25:46,231,780...46,353,557 		JBrowse link
G LOC103248666 tubulin-specific chaperone cofactor E-like protein enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:112,520,859...112,611,756
Ensembl chr 1:112,450,183...112,511,647
Ensembl chr 1:112,450,183...112,511,647 		JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming enables ISO (PMID:35337837) UniProt PMID:35337837 NCBI chr 1:893,554...926,854 JBrowse link
G MXRA5 matrix remodeling associated 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:1,525,422...1,563,711 JBrowse link
G PXDN peroxidasin enables IEA Ensembl GO_REF:0000107 NCBI chr14:105,936,992...106,060,582
Ensembl chr14:105,937,198...106,060,584 		JBrowse link
G TECTB tectorin beta enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:105,152,311...105,196,040
Ensembl chr 9:105,175,643...105,195,420 		JBrowse link
extracellular matrix constituent conferring elasticity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELN elastin enables ISO (MGI:5142190|PMID:20576933) RGD
BHF-UCL		 PMID:10090127 PMID:20576933 MGI:5142190 RGD:731206 NCBI chr28:8,999,164...9,048,703 JBrowse link
G EMILIN1 elastin microfibril interfacer 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:80,531,973...80,539,820 JBrowse link
extracellular matrix structural constituent conferring tensile strength term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:30,284,471...30,508,660
Ensembl chr20:30,284,447...30,508,658 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:38,882,591...38,912,602
Ensembl chr17:38,882,745...38,911,625 		JBrowse link
G COL15A1 collagen type XV alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:40,355,643...40,483,794 JBrowse link
G COL16A1 collagen type XVI alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 Ensembl chr20:101,166,681...101,189,772 JBrowse link
G COL17A1 collagen type XVII alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:97,079,444...97,136,878
Ensembl chr 9:97,080,191...97,135,545 		JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:89,129,674...89,186,490 JBrowse link
G COL1A1 collagen type I alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:43,134,648...43,152,313
Ensembl chr16:43,134,779...43,150,930 		JBrowse link
G COL1A2 collagen type I alpha 2 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:54,602,780...54,639,832
Ensembl chr21:54,602,398...54,632,780 		JBrowse link
G COL24A1 collagen type XXIV alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:47,260,635...47,650,408
Ensembl chr20:47,261,261...47,649,269 		JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:25,272,617...25,431,308
Ensembl chr12:25,272,609...25,429,086 		JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:50,667,287...50,844,773
Ensembl chr21:50,671,247...50,843,083 		JBrowse link
G COL2A1 collagen type II alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:44,196,213...44,227,718
Ensembl chr11:44,196,094...44,227,468 		JBrowse link
G COL3A1 collagen type III alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 Ensembl chr10:74,455,068...74,484,445 JBrowse link
G COL4A1 collagen type IV alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:88,410,800...88,564,191
Ensembl chr 3:88,412,168...88,564,057 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:88,564,328...88,760,191
Ensembl chr 3:88,563,903...88,760,411 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:113,183,843...113,338,230
Ensembl chr10:113,257,483...113,335,312 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:113,028,552...113,183,240
Ensembl chr10:113,028,552...113,165,958 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain enables IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:96,492,556...96,573,108 JBrowse link
G COL4A6 collagen type IV alpha 6 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:96,012,442...96,307,911 JBrowse link
G COL5A1 collagen type V alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:3,301,643...3,507,300
Ensembl chr12:3,301,175...3,459,607 		JBrowse link
G COL5A2 collagen type V alpha 2 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:74,509,704...74,659,251
Ensembl chr10:74,507,772...74,659,366 		JBrowse link
G COL5A3 collagen type V alpha 3 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:9,033,298...9,092,061
Ensembl chr 6:9,033,287...9,091,826 		JBrowse link
G COL6A5 collagen type VI alpha 5 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr15:59,713,906...59,826,244
Ensembl chr15:59,709,540...59,802,956 		JBrowse link
G COL6A6 collagen type VI alpha 6 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr15:59,517,463...59,671,767
Ensembl chr15:59,519,231...59,670,639 		JBrowse link
G COL7A1 collagen type VII alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:9,964,652...9,996,785
Ensembl chr22:9,964,651...9,996,626 		JBrowse link
G COL8A2 collagen type VIII alpha 2 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:96,728,341...96,761,495
Ensembl chr20:96,756,520...96,759,182 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:4,570,766...4,761,678
Ensembl chr17:4,674,162...4,761,924 		JBrowse link
G COL9A2 collagen type IX alpha 2 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:92,582,167...92,599,151
Ensembl chr20:92,582,736...92,599,423 		JBrowse link
G COL9A3 collagen type IX alpha 3 chain enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,385,108...1,411,960 JBrowse link
G MARCO macrophage receptor with collagenous structure enables IEA TreeGrafter GO_REF:0000118 NCBI chr10:11,329,036...11,389,428
Ensembl chr10:11,329,026...11,388,999 		JBrowse link
G SFTPD surfactant protein D enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:51,809,241...51,820,974
Ensembl chr 9:51,811,052...51,820,650 		JBrowse link
structural constituent of egg coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZP1 zona pellucida glycoprotein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:12,969,406...12,979,231
Ensembl chr 1:12,969,439...12,978,545 		JBrowse link
G ZP2 zona pellucida glycoprotein 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:19,318,026...19,338,966
Ensembl chr 5:19,319,034...19,338,495 		JBrowse link
G ZP3 zona pellucida glycoprotein 3 enables IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr28:10,534,383...10,579,828
Ensembl chr28:10,562,455...10,579,825 		JBrowse link
G ZP4 zona pellucida glycoprotein 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chr25:75,002,053...75,010,764
Ensembl chr25:75,002,344...75,010,323 		JBrowse link
structural constituent of synapse-associated extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAPLN4 hyaluronan and proteoglycan link protein 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:17,721,746...17,728,920
Ensembl chr 6:17,724,018...17,727,715 		JBrowse link
G LAMB2 laminin subunit beta 2 enables ISO (PMID:17189701) SynGO PMID:17189701 NCBI chr22:10,523,763...10,535,733
Ensembl chr22:10,523,717...10,536,207 		JBrowse link
structural constituent of tooth enamel term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBN ameloblastin enables IEA InterPro GO_REF:0000002 NCBI chr 7:19,107,182...19,121,992
Ensembl chr 7:19,107,299...19,122,285 		JBrowse link
G AMELX amelogenin X-linked enables ISO
IEA		 RGD
TreeGrafter		 PMID:16674699 GO_REF:0000118 RGD:1599097 NCBI chr  X:9,927,740...9,934,104
Ensembl chr  X:9,741,594...9,745,776
Ensembl chr  X:9,741,594...9,745,776 		JBrowse link
G ENAM enamelin enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:19,138,789...19,158,136
Ensembl chr 7:19,141,116...19,156,759 		JBrowse link
Term paths to the root