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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase I core promoter sequence-specific DNA binding
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Accession:GO:0001164 term browser browse the term
Definition:Binding to a regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery. This site is often referred to as the CORE element. In mammalian cells, the CORE element functions in conjunction with the Upstream Control Element (UCE), while in fungi, protozoa, and plants, the CORE element functions without a UCE.
Synonyms:exact_synonym: RNA polymerase I CORE element sequence-specific DNA binding
 related_synonym: RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity;   transcription factor activity, RNA polymerase I CORE element binding transcription factor recruiting
 alt_id: GO:0001187


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RNA polymerase I core promoter sequence-specific DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A contributes_to ISO (PMID:22368283) RGD PMID:22368283 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor enables ISO (PMID:22368283) RGD PMID:22368283 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 contributes_to
enables		 ISO
IEA		 (PMID:22368283)
GO_REF:0000107		 RGD
Ensembl		 PMID:22368283 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 contributes_to ISO (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B enables ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:21921198), (PMID:21921199)
GO_REF:0000107
GO_REF:0000033		 UniProt
RGD
Ensembl
GO_Central		 PMID:21921198 PMID:21921199 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C enables ISO
IBA		 (PMID:22368283)
GO_REF:0000033		 RGD
GO_Central		 PMID:22368283 GO_REF:0000033 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971 		JBrowse link
G Tbp TATA box binding protein enables ISO (PMID:11250903) RGD PMID:11250903 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Ubtf upstream binding transcription factor enables ISO
IBA		 (PMID:22368283)
GO_REF:0000033		 RGD
GO_Central		 PMID:22368283 GO_REF:0000033 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20626
    binding 17717
      organic cyclic compound binding 6134
        nucleic acid binding 3844
          transcription regulatory region nucleic acid binding 1301
            transcription cis-regulatory region binding 1296
              core promoter sequence-specific DNA binding 50
                RNA polymerase I core promoter sequence-specific DNA binding 8
Path 2
Term Annotations click to browse term
  molecular_function 20626
    binding 17717
      organic cyclic compound binding 6134
        nucleic acid binding 3844
          DNA binding 2276
            sequence-specific DNA binding 1469
              sequence-specific double-stranded DNA binding 1359
                transcription cis-regulatory region binding 1296
                  core promoter sequence-specific DNA binding 50
                    RNA polymerase I core promoter sequence-specific DNA binding 8
paths to the root