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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription export complex
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Accession:GO:0000346 term browser browse the term
Definition:The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans.
Synonyms:exact_synonym: TREX complex

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transcription export complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624801:10,734,392...10,738,191
Ensembl chrNW_004624801:10,733,907...10,738,124 		JBrowse link
G Chtop chromatin target of PRMT1 part_of ISO (PMID:23299939) UniProt PMID:23299939 NCBI chrNW_004624885:3,501,468...3,511,481
Ensembl chrNW_004624885:3,501,470...3,511,451 		JBrowse link
G Ddx39b DExD-box helicase 39B part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624754:24,657,019...24,667,225
Ensembl chrNW_004624754:24,657,914...24,667,579 		JBrowse link
G Nxf1 nuclear RNA export factor 1 located_in ISO (PMID:23299939) UniProt PMID:23299939 NCBI chrNW_004624926:1,247,940...1,268,968
Ensembl chrNW_004624926:1,247,071...1,269,146 		JBrowse link
G Sarnp SAP domain containing ribonucleoprotein part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:12,200,201...12,260,246
Ensembl chrNW_004624802:12,200,312...12,254,195 		JBrowse link
G Thoc1 THO complex 1 part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624770:10,771,785...10,811,287 JBrowse link
G Thoc2 THO complex 2 part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624797:2,299,694...2,411,269 JBrowse link
G Thoc3 THO complex 3 part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624733:14,005,563...14,022,516
Ensembl chrNW_004624733:14,005,501...14,023,617 		JBrowse link
G Thoc5 THO complex subunit 5 part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624747:5,840,862...5,874,350
Ensembl chrNW_004624747:5,840,862...5,874,334 		JBrowse link
G Thoc6 THO complex subunit 6 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:764,185...772,426
Ensembl chrNW_004624824:768,082...774,688
Ensembl chrNW_004624824:768,082...774,688 		JBrowse link
G Thoc7 THO complex subunit 7 part_of ISO (PMID:15833825), (PMID:15998806) UniProt PMID:15833825 PMID:15998806 NCBI chrNW_004624888:2,044,660...2,062,468
Ensembl chrNW_004624888:2,045,490...2,062,861 		JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A located_in ISO (PMID:22928037) UniProt PMID:22928037 NCBI chrNW_004624807:7,099,539...7,165,450
Ensembl chrNW_004624807:7,096,854...7,165,394 		JBrowse link
THO complex part of transcription export complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101713273 THO complex subunit 2-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624785:2,075,167...2,080,079 JBrowse link
G Thoc1 THO complex 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:10,771,785...10,811,287 JBrowse link
G Thoc2 THO complex 2 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624797:2,299,694...2,411,269 JBrowse link
G Thoc3 THO complex 3 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:14,005,563...14,022,516
Ensembl chrNW_004624733:14,005,501...14,023,617 		JBrowse link
G Thoc5 THO complex subunit 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:5,840,862...5,874,350
Ensembl chrNW_004624747:5,840,862...5,874,334 		JBrowse link
G Thoc6 THO complex subunit 6 part_of ISO (PMID:15998806) UniProt PMID:15998806 NCBI chrNW_004624824:764,185...772,426
Ensembl chrNW_004624824:768,082...774,688
Ensembl chrNW_004624824:768,082...774,688 		JBrowse link
G Thoc7 THO complex subunit 7 part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624888:2,044,660...2,062,468
Ensembl chrNW_004624888:2,045,490...2,062,861 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18619
    protein-containing complex 6050
      nuclear protein-containing complex 1750
        transcription export complex 13
          THO complex part of transcription export complex 7
Path 2
Term Annotations click to browse term
  cellular_component 18619
    cellular anatomical structure 18486
      organelle 13116
        membrane-bounded organelle 12020
          intracellular membrane-bounded organelle 11500
            nucleus 7394
              nuclear protein-containing complex 1750
                transcription export complex 13
                  THO complex part of transcription export complex 7
paths to the root