Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:squamous cell bile duct carcinoma
go back to main search page
Accession:DOID:5537 term browser browse the term
Definition:A squamous cell carcinoma that is located_in the bile duct. (DO)
Synonyms:xref: EFO:1000248;   NCI:C5777
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18976
    disease of cellular proliferation 7746
      Neoplasms by Histologic Type 5353
        cell type benign neoplasm 1969
          squamous cell neoplasm 694
            squamous cell carcinoma 644
              squamous cell bile duct carcinoma 0
                adenosquamous bile duct carcinoma + 0
                ampulla of Vater squamous cell carcinoma + 0
Path 2
Term Annotations click to browse term
  disease 18976
    disease of cellular proliferation 7746
      Neoplasms by Site 7201
        Digestive System Neoplasms 3835
          Gastrointestinal Neoplasms 3710
            gastrointestinal system benign neoplasm 236
              hepatobiliary benign neoplasm 184
                biliary tract benign neoplasm 155
                  Bile Duct Neoplasms 152
                    bile duct cancer 150
                      bile duct carcinoma 140
                        bile duct adenocarcinoma 140
                          cholangiocarcinoma 140
                            squamous cell bile duct carcinoma 0
                              adenosquamous bile duct carcinoma + 0
                              ampulla of Vater squamous cell carcinoma + 0
paths to the root