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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:thymoma
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Accession:DOID:3275 term browser browse the term
Definition:A thymus cancer that derives_from epithelial cells located_in the thymus. The tumor cells in a thymoma look similar to the normal cells of the thymus, grow slowly, and rarely spread beyond the thymus. (DO)
Synonyms:exact_synonym: thymomas
 primary_id: MESH:D013945
 xref: EFO:1000581;   ICDO:8580/3;   NCI:C198577;   NCI:C3411
For additional species annotation, visit the Alliance of Genome Resources.

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thymoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp4 aquaporin 4 ISO associated with Myasthenia Gravis RGD PMID:20728226 RGD:5148025 NCBI chrNW_004624770:5,581,192...5,593,470
Ensembl chrNW_004624770:5,580,808...5,594,628 		JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chrNW_004624822:4,809,489...4,818,514
Ensembl chrNW_004624822:4,809,405...4,818,515 		JBrowse link
G Birc2 baculoviral IAP repeat containing 2 ameliorates ISO mRNA:increased expression:thymus (human) RGD PMID:31964418 RGD:153344516 NCBI chrNW_004624878:476,460...514,637 JBrowse link
G Birc5 baculoviral IAP repeat containing 5 ameliorates ISO mRNA:increased expression:thymus (human) RGD PMID:31964418 RGD:153344516 NCBI chrNW_004624801:7,727,084...7,735,946
Ensembl chrNW_004624801:7,727,093...7,735,940 		JBrowse link
G Bsg basigin (Ok blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:36574092 NCBI chrNW_004624828:7,913,297...7,920,891
Ensembl chrNW_004624828:7,913,099...7,920,804 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chrNW_004624757:5,895,912...5,953,485 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta susceptibility ISO associated with Myasthenia Gravis;DNA:SNP:promoter: -579G>T(human) RGD PMID:24260492 RGD:9589098 NCBI chrNW_004624842:6,450,972...6,505,929
Ensembl chrNW_004624842:6,450,852...6,475,785 		JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Thymoma ClinVar PMID:20859122 PMID:24224811 PMID:25157968 PMID:25741868 PMID:26619011 More... NCBI chrNW_004624766:21,907,423...21,913,414
Ensembl chrNW_004624766:21,911,241...21,913,653 		JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase ISO ClinVar Annotator: match by term: Thymoma ClinVar PMID:7530509 PMID:9438854 PMID:10224103 PMID:10680913 PMID:11276010 More... NCBI chrNW_004624761:14,733,912...14,831,428 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Thymoma ClinVar PMID:20859122 PMID:24224811 PMID:25157968 PMID:25741868 PMID:26619011 More... NCBI chrNW_004624766:21,895,967...21,910,727
Ensembl chrNW_004624766:21,896,933...21,907,911 		JBrowse link
G Naip NLR family apoptosis inhibitory protein ameliorates ISO mRNA:increased expression:thymus (human) RGD PMID:31964418 RGD:153344516 NCBI chrNW_004624905:437,799...485,774 JBrowse link
G Pbrm1 polybromo 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chrNW_004624822:4,529,350...4,666,714
Ensembl chrNW_004624822:4,529,007...4,663,165 		JBrowse link
G Tp53 tumor protein p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 14215
    disease of cellular proliferation 6873
      Neoplasms by Histologic Type 4747
        Complex and Mixed Neoplasms 315
          thymoma 13
            Familial Thymoma 0
            Good syndrome 0
            combined thymoma 0
            encapsulated thymoma 0
            invasive malignant thymoma 0
            mixed type thymoma + 0
            noninvasive malignant thymoma 0
            spindle cell thymoma + 0
            thymoma type B + 0
            type C thymoma 0
Path 2
Term Annotations click to browse term
  disease 14215
    disease of anatomical entity 13931
      Immune & Inflammatory Diseases 4784
        immune system disease 4249
          lymphatic system disease 1569
            thymus gland disease 16
              Thymus Neoplasms 15
                thymus cancer 13
                  thymoma 13
                    Familial Thymoma 0
                    Good syndrome 0
                    combined thymoma 0
                    encapsulated thymoma 0
                    invasive malignant thymoma 0
                    mixed type thymoma + 0
                    noninvasive malignant thymoma 0
                    spindle cell thymoma + 0
                    thymoma type B + 0
                    type C thymoma 0
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