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spermatogenic failure 92 - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:spermatogenic failure 92
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Accession:DOID:0070591 term browser browse the term
Definition:A spermatogenic failure characterized by asthenozoospermia that has_material_basis_in homozygous mutation in the LRRC23 gene on chromosome 12p13.31. (DO)
Synonyms:exact_synonym: SPGF92
 alt_id: DOID:9004215
 xref: MIM:620848

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spermatogenic failure 92 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Lrrc23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chrNW_004624860:3,547,199...3,553,763
Ensembl chrNW_004624860:3,547,179...3,553,849 		JBrowse link
G G LRRC23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr11:6,922,612...6,946,786
Ensembl chr11:6,935,831...6,945,300 		JBrowse link
G P LRRC23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr 5:63,809,298...63,836,629
Ensembl chr 5:63,809,546...63,817,225 		JBrowse link
G S Lrrc23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chrNW_004936709:914,077...923,169
Ensembl chrNW_004936709:914,789...922,466 		JBrowse link
G D LRRC23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr27:38,128,954...38,144,481
Ensembl chr27:38,129,203...38,134,676 		JBrowse link
G B LRRC23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr12:7,033,989...7,043,704
Ensembl chr12:6,948,809...6,958,880 		JBrowse link
G C Lrrc23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chrNW_004955413:4,491,443...4,498,283
Ensembl chrNW_004955413:4,491,573...4,498,283 		JBrowse link
G R Lrrc23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr 4:159,267,572...159,277,764
Ensembl chr 4:157,581,291...157,591,860 		JBrowse link
G M Lrrc23 leucine rich repeat containing 23 ISO ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr 6:124,746,832...124,757,411
Ensembl chr 6:124,746,826...124,756,690 		JBrowse link
G H LRRC23 leucine rich repeat containing 23 IAGP ClinVar Annotator: match by term: Spermatogenic failure 92 OMIM
ClinVar		 PMID:37804054 PMID:38091523 NCBI chr12:6,904,822...6,914,229
Ensembl chr12:6,873,569...6,914,241 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 288179
    disease of anatomical entity 271815
      reproductive system disease 38042
        male reproductive system disease 24371
          male infertility 3377
            spermatogenic failure 1867
              spermatogenic failure 92 10
Path 2
Term Annotations click to browse term
  disease 288179
    disease of anatomical entity 271815
      Urogenital Diseases 59340
        Female Urogenital Diseases and Pregnancy Complications 28938
          Female Urogenital Diseases 23889
            female reproductive system disease 23859
              infertility 4135
                male infertility 3377
                  spermatogenic failure 1867
                    spermatogenic failure 92 10
paths to the root