Lrrc23 (leucine rich repeat containing 23)

Gene: Lrrc23 (leucine rich repeat containing 23) Chinchilla lanigera

Analyze

Symbol:

Lrrc23

Name:

leucine rich repeat containing 23

RGD ID:

8786970

Description:

ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 23

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,491,573 - 4,498,283 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	4,491,443 - 4,498,283 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 21 (ISO)

genetic disease (ISO)

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Klippel-Feil syndrome 3 (ISO)

lymphoproliferative syndrome 2 (ISO)

peroxisome biogenesis disorder 2B (ISO)

Temtamy syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Lrrc23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,491,573 - 4,498,283 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	4,491,443 - 4,498,283 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	6,904,822 - 6,914,229 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	6,873,569 - 6,914,241 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	7,013,986 - 7,023,393 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	6,884,213 - 6,893,667 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	8,632,507 - 8,642,019 (+)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	6,869,450 - 6,879,255 (+)	NCBI		HuRef
CHM1_1	12	7,012,914 - 7,022,288 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	6,915,432 - 6,925,409 (+)	NCBI		T2T-CHM13v2.0

Lrrc23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	124,746,832 - 124,757,411 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	124,746,826 - 124,756,690 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	124,769,869 - 124,780,438 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	124,769,863 - 124,779,727 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	124,719,881 - 124,729,736 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	124,735,482 - 124,745,337 (-)	NCBI		MGSCv36	mm8
Celera	6	126,451,592 - 126,461,382 (-)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	59.17	NCBI

Lrrc23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,267,572 - 159,277,764 (-)	NCBI		GRCr8
mRatBN7.2	4	157,581,285 - 157,592,188 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,581,291 - 157,591,860 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	163,803,504 - 163,813,680 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,586,413 - 159,596,589 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,227,996 - 158,238,125 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,294,386 - 157,304,590 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,294,287 - 157,304,653 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	9	20,241,062 - 20,251,319 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	224,311,985 - 224,322,180 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	160,899,357 - 160,909,547 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	161,144,293 - 161,154,430 (-)	NCBI
Celera	4	146,319,344 - 146,329,515 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

LRRC23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,468,201 - 12,477,941 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,464,961 - 12,474,693 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	7,033,989 - 7,043,704 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	6,948,809 - 6,958,880 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	6,948,809 - 6,958,880 (+)	Ensembl	panpan1.1		panPan2

LRRC23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,128,954 - 38,144,481 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,129,203 - 38,134,676 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,472,138 - 8,487,809 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,481,520 - 38,497,263 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,482,325 - 38,487,098 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,355,913 - 38,371,585 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,396,892 - 38,412,613 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,950,869 - 7,966,533 (+)	NCBI		UU_Cfam_GSD_1.0

Lrrc23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	102,246,458 - 102,255,711 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936709	914,789 - 922,466 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936709	914,077 - 923,169 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	63,809,546 - 63,817,225 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	63,809,298 - 63,836,629 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	66,246,067 - 66,272,165 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	6,922,612 - 6,946,786 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	6,935,831 - 6,945,300 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	1,272,492 - 1,282,137 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	3,547,179 - 3,553,849 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624860	3,547,199 - 3,553,763 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005378841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005378842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01013619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01003541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024039 ⟹ ENSCLAP00000023813

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955413	4,491,573 - 4,498,283 (+)	Ensembl

RefSeq Acc Id:

XM_005378841 ⟹ XP_005378898

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	4,491,573 - 4,498,283 (+)	NCBI

Sequence:

show sequence

TCGCGTCCTAGATACCCAAGCAGGGGCCAGCCGCTCCGCGCCCCCAGTTGCTATAACAGCAGTA
CACAACCCTCCACTCTTGCAGCTGTTCCAAAGCACTCCTTCGTTTTGGACCAAGAACCTCCCCA
GAATTGCTTCCATTTGAGAAAACCAGTTCTCCGTCCCTTTGGGAAGGGGGATTGGGACGAGGAC
TGCGCTTGACCTGACTCCAGAATCTCCCGGCGAGGAGAAAGATGTCAGACGAAGAAGATCTGGA
TGACTTGGAGCCAGAACAGGATGATCTGGAAAAAGAAGATGATAAAGATACAGAGGAGTGGGAA
GACTACAAGAAGGAGGGGGAAGACTTGTCTGAGGACTGGCTGCCCACGCCCCTGACGGAGGAGA
TGGTGAAGGAAGGGCTGTCTATGCTCTGTAAGACGGGGAATGGACTGGCTCATGCTTATGTTAA
ACTGGATCTTAAGGACAAAGACCTGACAGACATCTCCTTGTTGTGCTCCTACATCCATCTGCGC
TATGTGGATATCTCTGAGAACCATCTGACGGACCTGGCACCACTCAATAACCTCACCCACCTGC
TGTGGCTCAAGGCTGATGGCAACCAGCTTCGGAGTGCCCAGCTGAATGAACTGCCCTACTTGCA
GATCGCCAGTTTTGCCTACAACCAGATCACTGACACTGAAGGCATCTCTCATCCTCGGCTAGCA
AGCCTGGATCTCAAAGGGAACCGCATCCAGGTGGTGACCGGTTTGGACCCCGAGAAGTTGAAAA
GCCTGCACACTCTGGAGCTCCGGGGGAACCAGTTGTATACCACCATGGGAATCAACCTTCCTAA
GCTGAAGAAGCTCTTTCTGGCCCAGAACATGCTGAAGAAAGTGGAAGGCTTGGAAAGCCTAAGC
GATCTCACCACCTTACACCTGCGAGACAACCACATTGAAACTCTGAGCGGCTTCACCAAGGAAA
TGCAGTCACTGCAGTACCTCAACTTGAGGGGCAACTCTATAACCAGCCTGAGGGAGCTGGCCAA
GCTGCGGGAACTGCCCAAGCTGCGAGCTTTGGTGCTGCTGGAGAATCCGTGCACAGATGAGACT
GACTACCGCCAGGAGGCCCTGGTGCAGATGCCACACCTGGAGCGCCTGGACAAGGAGTTCTACG
AGGAAGAGGAAAGGGCTGAGGCTGATGAGATCCGTCAGAGGATGAAAGAGGAGCAGGAGCAGGA
GCCCCAGCCTGAGCATGACCTGGAACCGGACCAGCCATCCACCTAGCAGCAGTGCTGGTCTCCA
AGCACAGAAAGCAACGACTGGGGCCTGGCCCAAAGACCTATGAGACTGCGGGATGGGGAGCGGG
ACCCTGTATTCATACTCAGATATCACAGGGGACAAACCGGGAAAAGAGGAGACAGGATGCCTCC
CTTGCGCCAGAGCTGAAGATGTCTGGGCTCTGCGATGGGCACCTGGCCAGGGTGTTCGACTGGA
GCCTGCTGGGGTCTTAGGGATGGGTTTTCCAATAAAGGGACATCTTGGTACCCTGG

hide sequence

RefSeq Acc Id:

XM_005378842 ⟹ XP_005378899

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	4,491,443 - 4,498,283 (+)	NCBI

Sequence:

show sequence

AAGCCCTGCCCACTGCTTTACAGCCTCTGCTTCATCCGGGTTCCTGGGACTCGGAAGTTGGCCT
GGTAACCAGGCAACGCCTGGTCCACCGGGCCAGAGGACGAGGACTGCGCTTGACCTGACTCCAG
AATCTCCCGGCGAGGAGAAAGATGTCAGACGAAGAAGATCTGGATGACTTGGAGCCAGAACAGG
ATGATCTGGAAAAAGAAGATGATAAAGATACAGAGGAGTGGGAAGACTACAAGAAGGAGGGGGA
AGACTTGTCTGAGGACTGGCTGCCCACGCCCCTGACGGAGGAGATGGTGAAGGAAGGGCTGTCT
ATGCTCTGTAAGACGGGGAATGGACTGGCTCATGCTTATGTTAAACTGGATCTTAAGGACAAAG
ACCTGACAGACATCTCCTTGTTGTGCTCCTACATCCATCTGCGCTATGTGGATATCTCTGAGAA
CCATCTGACGGACCTGGCACCACTCAATAACCTCACCCACCTGCTGTGGCTCAAGGCTGATGGC
AACCAGCTTCGGAGTGCCCAGCTGAATGAACTGCCCTACTTGCAGATCGCCAGTTTTGCCTACA
ACCAGATCACTGACACTGAAGGCATCTCTCATCCTCGGCTAGCAAGCCTGGATCTCAAAGGGAA
CCGCATCCAGGTGGTGACCGGTTTGGACCCCGAGAAGTTGAAAAGCCTGCACACTCTGGAGCTC
CGGGGGAACCAGTTGTATACCACCATGGGAATCAACCTTCCTAAGCTGAAGAAGCTCTTTCTGG
CCCAGAACATGCTGAAGAAAGTGGAAGGCTTGGAAAGCCTAAGCGATCTCACCACCTTACACCT
GCGAGACAACCACATTGAAACTCTGAGCGGCTTCACCAAGGAAATGCAGTCACTGCAGTACCTC
AACTTGAGGGGCAACTCTATAACCAGCCTGAGGGAGCTGGCCAAGCTGCGGGAACTGCCCAAGC
TGCGAGCTTTGGTGCTGCTGGAGAATCCGTGCACAGATGAGACTGACTACCGCCAGGAGGCCCT
GGTGCAGATGCCACACCTGGAGCGCCTGGACAAGGAGTTCTACGAGGAAGAGGAAAGGGCTGAG
GCTGATGAGATCCGTCAGAGGATGAAAGAGGAGCAGGAGCAGGAGCCCCAGCCTGAGCATGACC
TGGAACCGGACCAGCCATCCACCTAGCAGCAGTGCTGGTCTCCAAGCACAGAAAGCAACGACTG
GGGCCTGGCCCAAAGACCTATGAGACTGCGGGATGGGGAGCGGGACCCTGTATTCATACTCAGA
TATCACAGGGGACAAACCGGGAAAAGAGGAGACAGGATGCCTCCCTTGCGCCAGAGCTGAAGAT
GTCTGGGCTCTGCGATGGGCACCTGGCCAGGGTGTTCGACTGGAGCCTGCTGGGGTCTTAGGGA
TGGGTTTTCCAATAAAGGGACATCTTGGTACCCTGG

hide sequence

RefSeq Acc Id:

XM_013511339 ⟹ XP_013366793

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	4,491,573 - 4,498,283 (+)	NCBI

Sequence:

show sequence

TCGCGTCCTAGATACCCAAGCAGGGGCCAGCCGCTCCGCGCCCCCAGTTGCTATAACAGCAGTA
CACAACCCTCCACTCTTGCAGCTGTTCCAAAGCACTCCTTCGTTTTGGACCAAGAACCTCCCCA
GAATTGCTTCCATTTGAGAAAACCAGTTCTCCGTCCCTTTGGGAAGGGGGATTGGGTGGGAAGA
CAGACAACAGAGGGAAATGGGACTAAGCAGGGAGGGAAAGTTAGAATGGTCAGGGGTCTGGGAG
GGCATCTTGAAGGGAGGAGACTGTGTATGGAAAGCATGAAATGGAGGCCGGGAGTCAGCAGGAG
ATGTTTGCAAGGGAAAGCACAGCTGGGAGTCGGGTAGGGGGTGATGGGCAGGTACTTGTCAAAG
AGGTAAGGGAACTGGGGGTTGGTGGAAACCTAGACCTTCTTTCTCAGGACGAGGACTGCGCTTG
ACCTGACTCCAGAATCTCCCGGCGAGGAGAAAGATGTCAGACGAAGAAGATCTGGATGACTTGG
AGCCAGAACAGGATGATCTGGAAAAAGAAGATGATAAAGATACAGAGGAGTGGGAAGACTACAA
GAAGGAGGGGGAAGACTTGTCTGAGGACTGGCTGCCCACGCCCCTGACGGAGGAGATGGTGAAG
GAAGGGCTGTCTATGCTCTGTAAGACGGGGAATGGACTGGCTCATGCTTATGTTAAACTGGATC
TTAAGGACAAAGACCTGACAGACATCTCCTTGTTGTGCTCCTACATCCATCTGCGCTATGTGGA
TATCTCTGAGAACCATCTGACGGACCTGGCACCACTCAATAACCTCACCCACCTGCTGTGGCTC
AAGGCTGATGGCAACCAGCTTCGGAGTGCCCAGCTGAATGAACTGCCCTACTTGCAGATCGCCA
GTTTTGCCTACAACCAGATCACTGACACTGAAGGCATCTCTCATCCTCGGCTAGCAAGCCTGGA
TCTCAAAGGGAACCGCATCCAGGTGGTGACCGGTTTGGACCCCGAGAAGTTGAAAAGCCTGCAC
ACTCTGGAGCTCCGGGGGAACCAGTTGTATACCACCATGGGAATCAACCTTCCTAAGCTGAAGA
AGCTCTTTCTGGCCCAGAACATGCTGAAGAAAGTGGAAGGCTTGGAAAGCCTAAGCGATCTCAC
CACCTTACACCTGCGAGACAACCACATTGAAACTCTGAGCGGCTTCACCAAGGAAATGCAGTCA
CTGCAGTACCTCAACTTGAGGGGCAACTCTATAACCAGCCTGAGGGAGCTGGCCAAGCTGCGGG
AACTGCCCAAGCTGCGAGCTTTGGTGCTGCTGGAGAATCCGTGCACAGATGAGACTGACTACCG
CCAGGAGGCCCTGGTGCAGATGCCACACCTGGAGCGCCTGGACAAGGAGTTCTACGAGGAAGAG
GAAAGGGCTGAGGCTGATGAGATCCGTCAGAGGATGAAAGAGGAGCAGGAGCAGGAGCCCCAGC
CTGAGCATGACCTGGAACCGGACCAGCCATCCACCTAGCAGCAGTGCTGGTCTCCAAGCACAGA
AAGCAACGACTGGGGCCTGGCCCAAAGACCTATGAGACTGCGGGATGGGGAGCGGGACCCTGTA
TTCATACTCAGATATCACAGGGGACAAACCGGGAAAAGAGGAGACAGGATGCCTCCCTTGCGCC
AGAGCTGAAGATGTCTGGGCTCTGCGATGGGCACCTGGCCAGGGTGTTCGACTGGAGCCTGCTG
GGGTCTTAGGGATGGGTTTTCCAATAAAGGGACATCTTGGTACCCTGG

hide sequence

RefSeq Acc Id:

XM_013511341 ⟹ XP_013366795

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	4,491,571 - 4,498,283 (+)	NCBI

Sequence:

show sequence

CTTCGCGTCCTAGATACCCAAGCAGGGGCCAGCCGCTCCGCGCCCCCAGTTGCTATAACAGCAG
TACACAACCCTCCACTCTTGCAGCTGTTCCAAAGCACTCCTTCGTTTTGGACCAAGAACCTCCC
CAGAATTGCTTCCATTTGAGAAAACCAGTTCTCCGTCCCTTTGGGAAGGGGGATTGGGTGGGAA
GACAGACAACAGAGGGAAATGGGACTAAGCAGGGAGGGAAAGTTAGAATGGTCAGGGGTCTGGG
AGGGCATCTTGAAGGGAGGAGACTGTGTATGGAAAGCATGAAATGGAGGCCGGGAGTCAGCAGG
AGATGTTTGCAAGGGAAAGCACAGCTGGGAGTCGGGTAGGGGGTGATGGGCAGGTACTTGTCAA
AGAGGTAAGGGAACTGGGGGTTGGTGGAAACCTAGACCTTCTTTCTCAGGACGAGGACTGCGCT
TGACCTGACTCCAGAATCTCCCGGCGAGGAGAAAGATGTCAGACGAAGAAGATCTGGATGACTT
GGAGCCAGAACAGGATGATCTGGAAAAAGAAGATGATAAAGATACAGAGGAGTGGGAAGACTAC
AAGAAGGAGGGGGAAGACTTGTCTGAGGACTGGCTGCCCACGCCCCTGACGGAGGAGATGGTGA
AGGAAGGGCTGTCTATGCTCTGTAAGACGGGGAATGGACTGGCTCATGCTTATGTTAAACTGGA
TCTTAAGGACAAAGACCTGACAGACATCTCCTTGTTGTGCTCCTACATCCATCTGCGCTATGTG
GATATCTCTGAGAACCATCTGACGGACCTGGCACCACTCAATAACCTCACCCACCTGCTGTGGC
TCAAGGCTGATGGCAACCAGCTTCGGAGTGCCCAGCTGAATGAACTGCCCTACTTGCAGATCGC
CAGTTTTGCCTACAACCAGATCACTGACACTGAAGGCATCTCTCATCCTCGGCTAGCAAGCCTG
GATCTCAAAGGGAACCGCATCCAGGTGGTGACCGGTTTGGACCCCGAGAAGTTGAAAAGCCTGC
ACACTCTGGAGCTCCGGGGGAACCAGTTGTATACCACCATGGGAATCAACCTTCCTAAGCTGAA
GAAGCTCTTTCTGGCCCAGAACATGCTGAAGAAAGTGGAAGGCTTGGAAAGCCTAAGCGATCTC
ACCACCTTACACCTGCGAGACAACCACATTGAAACTCTGAGCGGCTTCACCAAGGAAATGCAGT
CACTGCAGTACCTCAACTTGAGCCTGAGGGAGCTGGCCAAGCTGCGGGAACTGCCCAAGCTGCG
AGCTTTGGTGCTGCTGGAGAATCCGTGCACAGATGAGACTGACTACCGCCAGGAGGCCCTGGTG
CAGATGCCACACCTGGAGCGCCTGGACAAGGAGTTCTACGAGGAAGAGGAAAGGGCTGAGGCTG
ATGAGATCCGTCAGAGGATGAAAGAGGAGCAGGAGCAGGAGCCCCAGCCTGAGCATGACCTGGA
ACCGGACCAGCCATCCACCTAGCAGCAGTGCTGGTCTCCAAGCACAGAAAGCAACGACTGGGGC
CTGGCCCAAAGACCTATGAGACTGCGGGATGGGGAGCGGGACCCTGTATTCATACTCAGATATC
ACAGGGGACAAACCGGGAAAAGAGGAGACAGGATGCCTCCCTTGCGCCAGAGCTGAAGATGTCT
GGGCTCTGCGATGGGCACCTGGCCAGGGTGTTCGACTGGAGCCTGCTGGGGTCTTAGGGATGGG
TTTTCCAATAAAGGGACATCTTGGTACCCTGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005378898	(Get FASTA)	NCBI Sequence Viewer
	XP_005378899	(Get FASTA)	NCBI Sequence Viewer
	XP_013366793	(Get FASTA)	NCBI Sequence Viewer
	XP_013366795	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000023813
	ENSCLAP00000023813.1

RefSeq Acc Id:	XP_005378899 ⟸ XM_005378842
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W1K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEDLDDLEPEQDDLEKEDDKDTEEWEDYKKEGEDLSEDWLPTPLTEEMVKEGLSMLCKTGN GLAHAYVKLDLKDKDLTDISLLCSYIHLRYVDISENHLTDLAPLNNLTHLLWLKADGNQLRSAQ LNELPYLQIASFAYNQITDTEGISHPRLASLDLKGNRIQVVTGLDPEKLKSLHTLELRGNQLYT TMGINLPKLKKLFLAQNMLKKVEGLESLSDLTTLHLRDNHIETLSGFTKEMQSLQYLNLRGNSI TSLRELAKLRELPKLRALVLLENPCTDETDYRQEALVQMPHLERLDKEFYEEEERAEADEIRQR MKEEQEQEPQPEHDLEPDQPST hide sequence

RefSeq Acc Id:	XP_005378898 ⟸ XM_005378841
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W1K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEDLDDLEPEQDDLEKEDDKDTEEWEDYKKEGEDLSEDWLPTPLTEEMVKEGLSMLCKTGN GLAHAYVKLDLKDKDLTDISLLCSYIHLRYVDISENHLTDLAPLNNLTHLLWLKADGNQLRSAQ LNELPYLQIASFAYNQITDTEGISHPRLASLDLKGNRIQVVTGLDPEKLKSLHTLELRGNQLYT TMGINLPKLKKLFLAQNMLKKVEGLESLSDLTTLHLRDNHIETLSGFTKEMQSLQYLNLRGNSI TSLRELAKLRELPKLRALVLLENPCTDETDYRQEALVQMPHLERLDKEFYEEEERAEADEIRQR MKEEQEQEPQPEHDLEPDQPST hide sequence

RefSeq Acc Id:	XP_013366795 ⟸ XM_013511341
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2W1K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEDLDDLEPEQDDLEKEDDKDTEEWEDYKKEGEDLSEDWLPTPLTEEMVKEGLSMLCKTGN GLAHAYVKLDLKDKDLTDISLLCSYIHLRYVDISENHLTDLAPLNNLTHLLWLKADGNQLRSAQ LNELPYLQIASFAYNQITDTEGISHPRLASLDLKGNRIQVVTGLDPEKLKSLHTLELRGNQLYT TMGINLPKLKKLFLAQNMLKKVEGLESLSDLTTLHLRDNHIETLSGFTKEMQSLQYLNLSLREL AKLRELPKLRALVLLENPCTDETDYRQEALVQMPHLERLDKEFYEEEERAEADEIRQRMKEEQE QEPQPEHDLEPDQPST hide sequence

RefSeq Acc Id:	XP_013366793 ⟸ XM_013511339
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W1K8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDEEDLDDLEPEQDDLEKEDDKDTEEWEDYKKEGEDLSEDWLPTPLTEEMVKEGLSMLCKTGN GLAHAYVKLDLKDKDLTDISLLCSYIHLRYVDISENHLTDLAPLNNLTHLLWLKADGNQLRSAQ LNELPYLQIASFAYNQITDTEGISHPRLASLDLKGNRIQVVTGLDPEKLKSLHTLELRGNQLYT TMGINLPKLKKLFLAQNMLKKVEGLESLSDLTTLHLRDNHIETLSGFTKEMQSLQYLNLRGNSI TSLRELAKLRELPKLRALVLLENPCTDETDYRQEALVQMPHLERLDKEFYEEEERAEADEIRQR MKEEQEQEPQPEHDLEPDQPST hide sequence

RefSeq Acc Id:

ENSCLAP00000023813 ⟸ ENSCLAT00000024039

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016347	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024039	ENTREZGENE
	ENSCLAT00000024039.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Lrrc23	ENTREZGENE
PANTHER	DYNEIN AXONEMAL LIGHT CHAIN 1	UniProtKB/TrEMBL
	NISCHARIN RELATED	UniProtKB/TrEMBL
Pfam	LRR_6	UniProtKB/TrEMBL
	LRR_9	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_SD22	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A8C2W1K8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar