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blue cone monochromacy - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:blue cone monochromacy
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Accession:DOID:0050679 term browser browse the term
Definition:An achromatopsia that is characterized by severely impaired color discrimination, low visual acuity, nystagmus, photophobia due to the absence of functional long wavelength-sensitive and medium wavelength-sensitive cones in the retina and has_material_basis_in alteration in the red (OPN1LW) and green (OPN1MW) visual pigment gene cluster on chromosome Xq28 or in the locus control region for the red and green pigment genes, located adjacent to and 5-prime of the pigment gene cluster. (DO)
Synonyms:exact_synonym: BCM;   blue cone monochromatism;   color blindness blue mono cone monochromatic type
 narrow_synonym: CBBM CONE DYSTROPHY 5, X-LINKED;   COD5
 related_synonym: cone dystrophy 5, X-linked
 xref: GARD:917;   MESH:C536238;   MIM:303700;   MONDO:0010563;   ORDO:16


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blue cone monochromacy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G M LOC107963956 green (M) opsin gene upstream regulatory region ISO ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type ClinVar NCBI chr  X:73,166,107...73,171,117 JBrowse link
G H LOC125467793 Sharpr-MPRA regulatory region 3572 IAGP ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type ClinVar NCBI chr  X:154,136,674...154,136,968 JBrowse link
G P LOC494564 medium-wave-sensitive opsin ISO ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type | ClinVar Annotator: match by term: Cone dystrophy 5, X-linked OMIM
ClinVar
PMID:1302020 PMID:2788922 PMID:8666378 PMID:11772996 PMID:15094734 More... NCBI chr  X:124,816,014...124,828,225 JBrowse link
G D OPN1LW opsin 1, medium wave sensitive ISO ClinVar Annotator: match by term: Blue cone monochromacy | ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type OMIM
ClinVar
PMID:1881435 PMID:8666378 PMID:8792812 PMID:15094734 PMID:25741868 NCBI chr  X:121,974,552...121,987,418
Ensembl chr  X:121,974,552...121,987,418
JBrowse link
G H OPN1LW opsin 1, long wave sensitive IAGP
EXP
ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type
ClinVar Annotator: match by term: Blue cone monochromacy
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:1881435 PMID:8666378 PMID:8792812 PMID:15094734 PMID:25741868 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032
JBrowse link
G R Opn1mw opsin 1, medium wave sensitive ISO
ISS
OMIM:303700
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type | ClinVar Annotator: match by term: Cone dystrophy 5, X-linked
OMIM
MouseDO
CTD
ClinVar
PMID:1302020 PMID:2788922 PMID:8666378 PMID:11772996 PMID:15094734 More... NCBI chr  X:157,056,355...157,076,716
Ensembl chr  X:151,905,096...151,925,388
JBrowse link
G M Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) IAGP
ISO
OMIM:303700
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type | ClinVar Annotator: match by term: Cone dystrophy 5, X-linked
MouseDO
CTD
ClinVar
OMIM
PMID:1302020 PMID:2788922 PMID:8666378 PMID:11772996 PMID:15094734 More... NCBI chr  X:73,171,072...73,194,362
Ensembl chr  X:73,171,070...73,194,366
JBrowse link
G H OPN1MW opsin 1, medium wave sensitive IAGP
ISS
EXP
ClinVar Annotator: match by term: Cone dystrophy 5, X-linked
OMIM:303700
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type
ClinVar
MouseDO
CTD
OMIM
PMID:1302020 PMID:2788922 PMID:8666378 PMID:11772996 PMID:15094734 More... NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861
JBrowse link
G H OPSIN-LCR opsin locus control region IAGP ClinVar Annotator: match by term: Color blindness blue mono cone monochromatic type ClinVar NCBI chr  X:154,137,727...154,144,286 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 292310
    sensory system disease 89675
      Vision Disorders 2131
        blindness 1316
          color blindness 141
            achromatopsia 90
              blue cone monochromacy 9
Path 2
Term Annotations click to browse term
  disease 292310
    disease of anatomical entity 275968
      nervous system disease 194396
        Neurologic Manifestations 126897
          sensory system disease 89675
            eye disease 42532
              Vision Disorders 2131
                blindness 1316
                  color blindness 141
                    achromatopsia 90
                      blue cone monochromacy 9
paths to the root