C5h8orf34 (similar to human chromosome 8 open reading frame 34) - Rat Genome Database

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Gene: C5h8orf34 (similar to human chromosome 8 open reading frame 34) Rattus norvegicus
Analyze
Symbol: C5h8orf34 (Ensembl: RGD1564053)
Name: similar to human chromosome 8 open reading frame 34 (Ensembl:RIKEN cDNA A830018L16 gene)
RGD ID: 1564053
Description: Orthologous to human C8orf34 (chromosome 8 open reading frame 34); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC500390; LOC500390; RGD1564053; similar to hypothetical protein; uncharacterized protein C8orf34 homolog; uncharacterized protein LOC500390
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8512,021,000 - 12,560,212 (-)NCBIGRCr8
mRatBN7.257,237,968 - 7,777,119 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl57,238,853 - 7,776,769 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx59,400,673 - 9,929,803 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0511,039,572 - 11,568,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0510,735,309 - 11,264,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.056,935,078 - 7,465,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl56,936,016 - 7,465,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0511,756,424 - 12,289,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.456,480,880 - 7,044,373 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera56,808,288 - 7,330,098 (-)NCBICelera
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932  


Genomics

Comparative Map Data
C5h8orf34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8512,021,000 - 12,560,212 (-)NCBIGRCr8
mRatBN7.257,237,968 - 7,777,119 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl57,238,853 - 7,776,769 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx59,400,673 - 9,929,803 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0511,039,572 - 11,568,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0510,735,309 - 11,264,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.056,935,078 - 7,465,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl56,936,016 - 7,465,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0511,756,424 - 12,289,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.456,480,880 - 7,044,373 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera56,808,288 - 7,330,098 (-)NCBICelera
Cytogenetic Map5q11NCBI
C8orf34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38868,330,373 - 68,819,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl868,330,955 - 68,819,023 (+)EnsemblGRCh38hg38GRCh38
GRCh37869,242,608 - 69,731,258 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36869,512,702 - 69,893,811 (+)NCBINCBI36Build 36hg18NCBI36
Celera865,343,493 - 65,724,632 (+)NCBICelera
Cytogenetic Map8q13.2NCBI
HuRef864,735,152 - 65,223,364 (+)NCBIHuRef
CHM1_1869,298,400 - 69,786,652 (+)NCBICHM1_1
T2T-CHM13v2.0868,757,073 - 69,245,732 (+)NCBIT2T-CHM13v2.0
A830018L16Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39111,484,121 - 12,046,126 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl111,484,329 - 12,046,125 (+)EnsemblGRCm39 Ensembl
GRCm38111,413,615 - 11,975,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl111,414,105 - 11,975,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv37111,404,193 - 11,965,982 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36111,399,326 - 11,961,115 (+)NCBIMGSCv36mm8
Celera111,391,142 - 11,924,683 (+)NCBICelera
Cytogenetic Map1A2NCBI
cM Map12.57NCBI
CUNH8orf34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544410,700,981 - 11,071,442 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544410,700,697 - 11,071,804 (-)NCBIChiLan1.0ChiLan1.0
C7H8orf34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2784,062,196 - 84,547,669 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1859,704,177 - 60,189,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0864,867,411 - 65,352,819 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1866,527,512 - 67,010,472 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl866,528,232 - 67,009,695 (+)Ensemblpanpan1.1panPan2
C29H8orf34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12917,817,923 - 18,221,414 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2917,817,952 - 18,197,607 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2918,138,783 - 18,518,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02917,908,879 - 18,314,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2917,908,740 - 18,289,461 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12917,954,764 - 18,332,546 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02918,025,769 - 18,403,338 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02918,295,264 - 18,682,468 (+)NCBIUU_Cfam_GSD_1.0
CUNH8orf34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530368,890,443 - 69,397,432 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364965,499,033 - 5,894,847 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364965,498,146 - 5,894,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C4H8orf34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl466,275,904 - 66,636,960 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1466,275,896 - 66,637,493 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2472,402,068 - 72,488,579 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH8orf34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1864,150,175 - 64,628,622 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl864,151,983 - 64,628,605 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603976,868,892 - 77,349,898 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH8orf34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474422,416,147 - 22,838,084 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C5h8orf34
3310 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:77
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000066254
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat

Markers in Region
D5Got1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.257,767,486 - 7,767,685 (+)MAPPERmRatBN7.2
Rnor_6.057,456,385 - 7,456,581NCBIRnor6.0
Rnor_5.0512,279,760 - 12,279,956UniSTSRnor5.0
RGSC_v3.457,035,092 - 7,035,288UniSTSRGSC3.4
RGSC_v3.457,217,028 - 7,217,225RGDRGSC3.4
RGSC_v3.457,035,091 - 7,035,288RGDRGSC3.4
RGSC_v3.457,217,029 - 7,217,225UniSTSRGSC3.4
RGSC_v3.157,217,028 - 7,217,225RGD
Celera57,320,820 - 7,321,016UniSTS
Cytogenetic Map5q11UniSTS
D5Got299  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.257,515,205 - 7,515,477 (+)MAPPERmRatBN7.2
Rnor_6.057,209,934 - 7,210,205NCBIRnor6.0
Rnor_5.0512,029,931 - 12,030,202UniSTSRnor5.0
RGSC_v3.456,763,327 - 6,763,598UniSTSRGSC3.4
Celera57,078,277 - 7,078,554UniSTS
Cytogenetic Map5q11UniSTS
BF386244  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.257,337,408 - 7,337,562 (+)MAPPERmRatBN7.2
Rnor_6.057,036,228 - 7,036,381NCBIRnor6.0
Rnor_5.0511,856,456 - 11,856,609UniSTSRnor5.0
RGSC_v3.456,580,254 - 6,580,407UniSTSRGSC3.4
Celera56,907,853 - 6,908,006UniSTS
RH 3.4 Map50.0UniSTS
Cytogenetic Map5q11UniSTS
RH135096  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.257,535,387 - 7,535,569 (+)MAPPERmRatBN7.2
Rnor_6.057,230,226 - 7,230,407NCBIRnor6.0
Rnor_5.0512,050,223 - 12,050,404UniSTSRnor5.0
RGSC_v3.456,783,532 - 6,783,713UniSTSRGSC3.4
Celera57,098,636 - 7,098,817UniSTS
RH 3.4 Map50.0UniSTS
Cytogenetic Map5q11UniSTS
AW529472  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.257,533,935 - 7,534,123 (+)MAPPERmRatBN7.2
Rnor_6.057,228,774 - 7,228,961NCBIRnor6.0
Rnor_5.0512,048,771 - 12,048,958UniSTSRnor5.0
RGSC_v3.456,782,080 - 6,782,267UniSTSRGSC3.4
Celera57,097,184 - 7,097,371UniSTS
RH 3.4 Map50.0UniSTS
Cytogenetic Map5q11UniSTS
AU049575  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.257,561,750 - 7,561,967 (+)MAPPERmRatBN7.2
Rnor_6.057,256,507 - 7,256,723NCBIRnor6.0
Rnor_5.0512,076,504 - 12,076,720UniSTSRnor5.0
RGSC_v3.456,809,894 - 6,810,110UniSTSRGSC3.4
Celera57,125,004 - 7,125,220UniSTS
Cytogenetic Map5q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 17
Low 18 18 1 18 43 28 22 9
Below cutoff 2 18 35 23 11 23 4 5 14 7 19 2 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001195648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC111074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE108121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066254   ⟹   ENSRNOP00000060947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl57,238,853 - 7,776,769 (-)Ensembl
Rnor_6.0 Ensembl56,936,016 - 7,465,510 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096147   ⟹   ENSRNOP00000078997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl57,238,853 - 7,776,769 (-)Ensembl
RefSeq Acc Id: NM_001109259   ⟹   NP_001102729
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,000 - 12,559,772 (-)NCBI
mRatBN7.257,237,968 - 7,776,769 (-)NCBI
Rnor_6.056,937,183 - 7,465,665 (-)NCBI
Rnor_5.0511,756,424 - 12,289,040 (-)NCBI
RGSC_v3.456,480,880 - 7,044,373 (-)RGD
Celera56,808,288 - 7,330,098 (-)RGD
Sequence:
RefSeq Acc Id: NM_001195648   ⟹   NP_001182577
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,316,938 - 12,559,772 (-)NCBI
mRatBN7.257,533,908 - 7,776,769 (-)NCBI
RefSeq Acc Id: XM_017593561   ⟹   XP_017449050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,560,212 (-)NCBI
mRatBN7.257,237,970 - 7,777,115 (-)NCBI
Rnor_6.056,935,079 - 7,465,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593562   ⟹   XP_017449051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,560,212 (-)NCBI
mRatBN7.257,237,970 - 7,777,114 (-)NCBI
Rnor_6.056,937,913 - 7,465,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593563   ⟹   XP_017449052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,560,212 (-)NCBI
mRatBN7.257,237,970 - 7,777,116 (-)NCBI
Rnor_6.056,937,913 - 7,465,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593564   ⟹   XP_017449053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,560,212 (-)NCBI
mRatBN7.257,237,970 - 7,777,119 (-)NCBI
Rnor_6.056,935,078 - 7,465,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593566   ⟹   XP_017449055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,316,938 - 12,560,212 (-)NCBI
mRatBN7.257,532,280 - 7,777,095 (-)NCBI
Rnor_6.057,228,751 - 7,465,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110519   ⟹   XP_038966447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,560,212 (-)NCBI
mRatBN7.257,237,970 - 7,777,118 (-)NCBI
RefSeq Acc Id: XM_039110520   ⟹   XP_038966448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,512,149 (-)NCBI
mRatBN7.257,237,970 - 7,729,471 (-)NCBI
RefSeq Acc Id: XM_039110521   ⟹   XP_038966449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,559,320 (-)NCBI
mRatBN7.257,237,970 - 7,776,317 (-)NCBI
RefSeq Acc Id: XM_063288168   ⟹   XP_063144238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8512,021,756 - 12,560,212 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102729   ⟸   NM_001109259
- Peptide Label: isoform 1
- UniProtKB: D3ZPH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449053   ⟸   XM_017593564
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017449050   ⟸   XM_017593561
- Peptide Label: isoform X2
- UniProtKB: A6JFE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449052   ⟸   XM_017593563
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017449051   ⟸   XM_017593562
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZLX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449055   ⟸   XM_017593566
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000060947   ⟸   ENSRNOT00000066254
RefSeq Acc Id: XP_038966447   ⟸   XM_039110519
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966449   ⟸   XM_039110521
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038966448   ⟸   XM_039110520
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000078997   ⟸   ENSRNOT00000096147
RefSeq Acc Id: NP_001182577   ⟸   NM_001195648
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063144238   ⟸   XM_063288168
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPH6-F1-model_v2 AlphaFold D3ZPH6 1-459 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564053 AgrOrtholog
BioCyc Gene G2FUF-42222 BioCyc
Ensembl Genes ENSRNOG00000005375 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066254 ENTREZGENE
  ENSRNOT00000066254.4 UniProtKB/TrEMBL
  ENSRNOT00000096147.1 UniProtKB/TrEMBL
Gene3D-CATH cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/TrEMBL
InterPro DUF5586 UniProtKB/TrEMBL
KEGG Report rno:500390 UniProtKB/TrEMBL
NCBI Gene 500390 ENTREZGENE
PANTHER PTHR32000 UniProtKB/TrEMBL
  SIMILAR TO HYPOTHETICAL PROTEIN UniProtKB/TrEMBL
Pfam DUF5586 UniProtKB/TrEMBL
PhenoGen C5h8orf34 PhenoGen
RatGTEx ENSRNOG00000005375 RatGTEx
Superfamily-SCOP Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit UniProtKB/TrEMBL
UniProt A0A8I5ZLX5 ENTREZGENE, UniProtKB/TrEMBL
  A6JFE3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPH6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C5h8orf34  similar to human chromosome 8 open reading frame 34  RGD1564053  similar to hypothetical protein  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1564053  similar to hypothetical protein   RGD1564053_predicted  similar to hypothetical protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564053_predicted  similar to hypothetical protein (predicted)  LOC500390  similar to hypothetical protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500390  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL