1700001K19Rikl (RIKEN cDNA 1700001K19 gene like) - Rat Genome Database

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Gene: 1700001K19Rikl (RIKEN cDNA 1700001K19 gene like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 1700001K19Rikl (Ensembl: RGD1305298)
Name: RIKEN cDNA 1700001K19 gene like (Ensembl:hypothetical LOC299330)
RGD ID: 1305298
Description: INTERACTS WITH 4,4'-sulfonyldiphenol; bis(2-ethylhexyl) phthalate; bisphenol A
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical LOC299330; hypothetical protein LOC299330; LOC103690170; LOC299330; RGD1305298; testis specific protein 26; Tsp26; uncharacterized LOC103690170; uncharacterized protein LOC103690170; uncharacterized protein LOC299330
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,502,831 - 135,523,451 (-)NCBIGRCr8
mRatBN7.26129,681,598 - 129,697,052 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6129,681,599 - 129,693,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6129,858,691 - 129,870,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,154,684 - 130,166,651 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,518,478 - 129,530,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,085,566 - 135,098,513 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,021,780 - 135,089,409 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,160,695 - 144,173,251 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,392,175 - 135,404,820 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16135,398,360 - 135,400,689 (-)NCBI
Celera6127,251,271 - 127,263,449 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in 1700001K19Rikl
95 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:47
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000009444
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
BE114478  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26129,681,633 - 129,682,450 (+)MAPPERmRatBN7.2
Rnor_6.06135,086,520 - 135,087,336NCBIRnor6.0
Rnor_6.06135,023,560 - 135,024,376NCBIRnor6.0
Rnor_5.06144,160,731 - 144,161,547UniSTSRnor5.0
RGSC_v3.46135,392,210 - 135,393,026UniSTSRGSC3.4
Celera6127,251,306 - 127,252,122UniSTS
RH 3.4 Map6787.3UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2
Low 3 10 20 4 19 4 8 9 11 9 11 11 8
Below cutoff 1 7 7 7 2 8 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG969841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009444   ⟹   ENSRNOP00000009444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6129,681,599 - 129,693,580 (-)Ensembl
Rnor_6.0 Ensembl6135,024,305 - 135,026,449 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089238   ⟹   ENSRNOP00000069842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6135,087,265 - 135,089,409 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089443   ⟹   ENSRNOP00000069891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6135,021,780 - 135,089,063 (-)Ensembl
RefSeq Acc Id: NM_001134526   ⟹   NP_001127998
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,832 - 135,514,813 (-)NCBI
mRatBN7.26129,681,599 - 129,693,580 (-)NCBI
Rnor_6.06135,086,485 - 135,098,466 (-)NCBI
Rnor_5.06144,160,695 - 144,173,251 (-)NCBI
RGSC_v3.46135,392,175 - 135,404,820 (-)RGD
Celera6127,251,271 - 127,263,449 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112081   ⟹   XP_038968009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,523,451 (-)NCBI
mRatBN7.26129,681,598 - 129,697,051 (-)NCBI
RefSeq Acc Id: XM_039112082   ⟹   XP_038968010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
mRatBN7.26129,681,598 - 129,692,863 (-)NCBI
RefSeq Acc Id: XM_039112085   ⟹   XP_038968013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
mRatBN7.26129,681,598 - 129,692,619 (-)NCBI
RefSeq Acc Id: XM_039112086   ⟹   XP_038968014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
mRatBN7.26129,681,598 - 129,692,863 (-)NCBI
RefSeq Acc Id: XM_039112087   ⟹   XP_038968015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
mRatBN7.26129,681,598 - 129,692,863 (-)NCBI
RefSeq Acc Id: XM_039112089   ⟹   XP_038968017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,523,451 (-)NCBI
mRatBN7.26129,681,598 - 129,697,052 (-)NCBI
RefSeq Acc Id: XM_039112090   ⟹   XP_038968018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
mRatBN7.26129,681,598 - 129,692,863 (-)NCBI
RefSeq Acc Id: XM_039112092   ⟹   XP_038968020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,523,451 (-)NCBI
mRatBN7.26129,681,598 - 129,697,052 (-)NCBI
RefSeq Acc Id: XM_039112093   ⟹   XP_038968021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
mRatBN7.26129,681,598 - 129,692,863 (-)NCBI
RefSeq Acc Id: XM_063261782   ⟹   XP_063117852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
RefSeq Acc Id: XM_063261783   ⟹   XP_063117853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,502,831 - 135,514,115 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001127998   ⟸   NM_001134526
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038968020   ⟸   XM_039112092
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968017   ⟸   XM_039112089
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968009   ⟸   XM_039112081
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968015   ⟸   XM_039112087
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968021   ⟸   XM_039112093
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968014   ⟸   XM_039112086
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968018   ⟸   XM_039112090
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968010   ⟸   XM_039112082
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968013   ⟸   XM_039112085
- Peptide Label: isoform X1
- UniProtKB: D3ZSX0 (UniProtKB/TrEMBL),   A6KBM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000069842   ⟸   ENSRNOT00000089238
RefSeq Acc Id: ENSRNOP00000069891   ⟸   ENSRNOT00000089443
RefSeq Acc Id: ENSRNOP00000009444   ⟸   ENSRNOT00000009444
RefSeq Acc Id: XP_063117853   ⟸   XM_063261783
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117852   ⟸   XM_063261782
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSX0-F1-model_v2 AlphaFold D3ZSX0 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305298 AgrOrtholog
BioCyc Gene G2FUF-35876 BioCyc
Ensembl Genes ENSRNOG00000007184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009444 ENTREZGENE
  ENSRNOT00000009444.7 UniProtKB/TrEMBL
KEGG Report rno:299330 UniProtKB/TrEMBL
NCBI Gene 299330 ENTREZGENE
PANTHER MCG11474 UniProtKB/TrEMBL
  RIKEN CDNA 1700001K19 GENE UniProtKB/TrEMBL
PhenoGen 1700001K19Rikl PhenoGen
RatGTEx ENSRNOG00000007184 RatGTEx
UniProt A6KBM4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSX0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 1700001K19Rikl  RIKEN cDNA 1700001K19 gene like  RGD1305298  hypothetical LOC299330  Symbol and Name Changed 1299863 APPROVED
2021-03-09 RGD1305298  hypothetical LOC299330  LOC103690170  uncharacterized LOC103690170  Data merged from RGD:9288399 737654 PROVISIONAL
2014-08-25 LOC103690170  uncharacterized LOC103690170      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1305298  hypothetical LOC299330   RGD1305298_predicted  hypothetical LOC299330 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1305298_predicted  hypothetical LOC299330 (predicted)  LOC299330_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299330_predicted  hypothetical LOC299330 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL