Conflict Report: Single Genes


The chromosome location of genes was compared between the Baylor 3.4 and Celera genome assemblies.  164 genes were assigned to different chromosomes in the two assemblies.  111 of these fell into 6 groups based on sequential location of 5 or more genes.  Genes that did not fall into any of these regions are listed here. For additional conflict information see conflict reports for regions on chromosomes 1, 7, 17, and 19, and X.

RGD 
BAYLOR 3.4 
CELERA 
RGD ID 
GENE SYMBOL 
ACC ID 
CHR 
START 
END 
STRAND 
ACC ID 
CHR 
START 
END 
STRAND 
628702
Ppp1r14b
NM_172045
1
209648656
209650766
+
NM_172045
12
17725470
17726451
+
1563903
RGD1563903_predicted
XM_574809
2
429505
430142
+
XM_001061405
12
929972
938803
-
1561229
RGD1561229_predicted
XM_577973
2
771502
771876
+
XM_001061341
12
898711
899085
-
620572
Faim
NM_080895
2
9522802
9539268
+
NM_080895
8
98949775
98965493
+
735201
Cxadrl1
NM_199406
2
9544971
9579186
-
NM_199406
8
98971196
99005422
-
2076
Ak1
NM_024349
2
19821481
19822543
+
NM_024349
3
10656922
10664141
+
 
 
NM_053976
2
80043195
80044562
+
XM_001053042
7
129594038
129597714
+
3312
Pgam1
NM_053290
2
162840850
162842593
+
NM_053290
1
236559287
236566456
+
621127
Dpp3
NM_053748
3
138286276
138288886
+
NM_053748
1
199744186
199768441
-
621131
Uchl3
XM_575294
3
163941218
163942121
-
XM_001076488
15
77676780
77718589
+
 
 
XR_005524
4
24494286
24494978
-
XR_007675
X
5833143
5833835
+
1560454
RGD1560454_predicted
XM_575496
4
86170994
86172224
-
XM_001080836
1
91778146
91796255
-
 
 
XR_006851
4
100272980
100277749
+
XR_007669
3
18981756
18986525
-
 
 
XR_006919
4
102285813
102286585
-
XR_007440
3
17058713
17059485
+
 
 
XR_006943
4
102632436
102633273
-
XR_007377
3
16702092
16703063
+
 
 
XR_006622
4
134952399
134969723
-
XR_008017
9
82702609
82705032
+
621761
Sumo2
NM_133594
5
15325450
15326429
+
NM_133594
10
99346628
99359118
-
1562995
LOC502940
XR_007268
5
24455700
24457363
-
XR_009615
17
41004976
41008853
-
621622
Tmsb4x
NM_031136
5
59581838
59582435
-
NM_031136
X
27555903
27557893
+
621197
Marcksl1
NM_030862
5
148669498
148672336
+
NM_030862
1
79297430
79298943
+
621725
Hspa8
NM_024351
5
162476666
162478778
-
NM_024351
8
40782915
40786777
+
1564829
LOC364296
XR_007269
5
172637026
172637334
+
XR_009613
16
1903395
1905492
-
1359510
LOC298795
NM_001013941
6
23095403
23096685
-
XM_001065279
X
59181798
59187966
-
727968
Ndufa10
NM_199495
6
62280336
62282263
-
NM_199495
9
90544386
90579110
-
620221
Snap23
NM_022689
6
101650528
101650861
-
NM_022689
3
106435011
106450155
+
621203
Rpl32
NM_013226
6
145183237
145183707
-
NM_013226
4
137754088
137757652
-
1311538
Tbca
NM_001013245
7
141657521
141663959
+
NM_001013245
2
22083635
22136708
+
2293
Ccnd3
NM_012766
8
77060065
77073605
+
NM_012766
9
11145440
11151480
-
621477
Eif4g2
XM_001072139
9
29441018
29451460
+
XM_001077834
1
163069814
163082142
-
3619
Sag
NM_013023
9
86759932
86799901
+
NM_013023
2
54322669
54345209
-
1309819
Chchd2
NM_001015019
9
93253925
93254596
-
XM_001052992
12
28534998
28540869
+
1564084
RGD1564084_predicted
NM_001025287
9
112831949
112833128
-
NM_001025287
8
64190174
64207799
+
1564051
RGD1564051_predicted
XM_576632
9
113233087
113234095
-
XM_001053149
10
106027708
106028716
-
1564189
Dock2
XM_001068649
10
19207486
19660352
-
XM_001063344
2
140962200
140969878
-
1311564
RGD1311564_predicted
XM_346895
10
75211295
75263974
-
XM_001070382
15
14475591
14476646
+
1304556
Actg1
XM_001076100
10
109773484
109780937
-
XM_001058533
18
23378984
23380934
-
1307072
Ndufb4
NM_001037338
11
64852588
64859548
+
XM_001056198
X
40042297
40042786
-
2802
Hmgb1
XM_001072913
12
6474239
6490367
+
NM_012963
16
33957764
33959998
+
2710
Glul
NM_017073
12
32898168
32924845
+
NM_017073
13
65918071
65930930
+
1307938
Morf4l1
NM_001011999
13
91235624
91237344
-
NM_001011999
8
90186129
90207658
-
 
 
XM_001052982
14
77408636
77411573
+
NM_001013236
1
154890870
154915172
+
621374
Atp5e
NM_139099
14
83615555
83615918
+
NM_139099
3
162432455
162435360
-
1305373
Itgb4bp
NM_001037352
14
87464742
87465776
-
NM_001037352
3
143049278
143055526
-
1311199
Peli1
XM_001070955
14
101870112
101925872
+
XM_001060915
1
69728292
69730914
-
2258
Calm2
NM_017326
15
64161640
64162750
-
NM_017326
6
6842935
6855588
+
621046
Rps28
XM_001060434
16
71191204
71191550
+
XM_001079210
7
13505206
13506561
-
727960
Hs1bp1
NM_181627
17
58536807
58537888
+
NM_181627
2
169373703
169377127
-
1560045
LOC498826
XR_005450
20
53193355
53193670
+
XR_009609
13
82801205
82801566
-
3322
Phb
XM_001053030
X
36613022
36614779
-
XM_001053031
10
79374762
79386570
+
1359415
MGC105830
NM_001008370
X
73108020
73109851
+
XM_001052971
1
199945208
199953129
-
 
 
NM_001039346
X
76627926
76628976
+
NM_001039346
1
236580658
236592001
+
1562947
LOC501617
NM_001024366
X
121648062
121674376
+
XM_001078508
7
113744210
113765866
+

 

 

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.