D20Arb10 Marker Search Result - Rat Genome Database

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General

Marker: D20Arb10

Symbol:

D20Arb10

Previously known as:

oxsts7796; R0270-D06; D20Arb249;

RGD ID:

42096

Expected Size:

270 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	20	52,896,240 - 52,896,510 (+)	Marker Load Pipeline
mRatBN7.2	20	51,313,962 - 51,314,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	52,966,884 - 52,967,153	NCBI	Rnor6.0
Rnor_5.0	20	54,571,986 - 54,572,255	UniSTS	Rnor5.0
RGSC_v3.4	20	52,214,729 - 52,214,999	RGD	RGSC3.4
RGSC_v3.4	20	52,214,730 - 52,214,999	UniSTS	RGSC3.4
Celera	20	48,774,140 - 48,774,409	UniSTS
RGSC_v3.1	20	52,243,426 - 52,243,696	RGD
SHRSP x BN Map	20	48.2299	UniSTS
SHRSP x BN Map	20	48.2299	RGD
FHH x ACI Map	20	34.0098	RGD
Cytogenetic Map	20		RGD

Is Marker For:

Strains: ACI/N ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	Electronic Submission of SSLP Data Sets	Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence


Forward Primer	CCAAGACACTTAGTGCTATG
Reverse Primer	GCATACCTTGGAAACTGTTC

Strain Variation

Strain, Expected Size(s)

ACI/N	263
BBDP/Rhw	263
BBDR/Rhw	243
BC/CpbU	275
BDIX/Han	241
BDVII/Cub	261
BN-Lx/Cub	265
BN/SsNHsd	269
BP/Cub	263
BUF/Pit	259
COP/OlaHsd	241
DA/PitN	265

DON/Melb	263
F344/Pit	263
FHH/Eur	241
GH/Omr	263
GK/KyoSwe	245
IS/Kyo	229
LE/Mol	245
LEW/Pit	241
LH/Mav	259
LN/Mav	259
LOU/CHan	263
M520/N	263

MHS/Gib	241
MNR/N	265
MNRA/N	247,365
MNS/Gib	241
MR/Pit	265
NEDH/K	263
NP9	243
ODU/N	243
OKA/Wsl	281
OM/Ztm	263
P5C	243
PVG/Pit	263

SD/Rij	243
SHR/OlaHsd	281
SHRSP/Riv	281
SR/Jr	261
SS/Jr	263
WAG/RijKyo	241
WF/Pit	241
WIST/Nhg	263
WKY/OlaHsd	243
WN/N	263
WTC/Kyo	245

Region

Nucleotide Sequences


GenBank Nucleotide	CH474025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Additional Information

RGD Curation Notes

Note Type	Note	Reference

External Database Links

Database	Acc Id	Source(s)
NCBI Nucleotide	U12241
	U12242

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D20Arb10