D9Rat178 Marker Search Result - Rat Genome Database

Advanced Search (OLGA)

General

Marker: D9Rat178

Symbol:

D9Rat178

Previously known as:

oxsts11695; R0302-A11;

RGD ID:

41812

Expected Size:

201 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
SHRSP x BN Map	9	41.1098	RGD
SHRSP x BN Map	9	41.1098	UniSTS

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	CATTCCCAGCCCTCTTTTTA
Reverse Primer	GGGCCTAGTGGTGTAAGTCTG

Template	GNATGCATGNAGGTCGATCTAGAGGATCCCCCTCCATTCCCAGCCCTCTTTTTACTGCCTTAAA GAAAATAGGTCTCACAAAGTTACCCAGACTAGCCTTGAGTTCCTTCTGCAGTCCAGGCACACAC ACACACACACACACACACACACACACACACACACACACACACACACCGCTATTCTCCTGTCCTA GCCCCTGGAGCAGTTTTTATTACAGACTTACACCACTAGGCCCTAGGGGTACCGAGCTCGAATT CGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTTCCACACAACA TACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAAT TGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATC GGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGT GAGANGGGNAACAGCTGATTGCCCTTCACCGCTGGCCCTGAGAGAGTTGNAGCAAGCGGTCCAC GTGGTTTGCCCCAGCAGGCGAAAATCTGTTTGATGGTGGTTCCGAAATCGGNAAAATCCCTTAT AAATCAAAAGAATAGCCGAGATAGGGTGAGTGTTGTTCCGTTTGGAACAGAGTCCATATTAAGA AGTGGNTCANGTAAGGGGAAACGTTATAGGGAGGCACTAGTGNCNTCCCANTCNTTTTGNGTGA GTGNGAANANNANGGNNCTAAGGAGCCCGTTANCTNAGGAAGCGG

Strain Variation

Strain, Expected Size(s)

ACI/N	210
AVN/Orl	210
BBDP/Rhw	212
BBDR/Rhw	212
BC/CpbU	208
BDIX/Han	216
BDVII/Cub	202
BN-Lx/Cub	84
BN/SsNHsd	84
BP/Cub	206
BUF/Pit	210
COP/OlaHsd	206

DA/PitN	208
DON/Melb	210
F344/Pit	210
FHH/Eur	210
GH/Omr	210
GK/KyoSwe	208
IS/Kyo	208
LE/Mol	206
LEW/Pit	210
LH/Mav	210
LN/Mav	210
LOU/CHan	94

M520/N	212
MHS/Gib	210
MNR/N	210
MNRA/N	210
MNS/Gib	210
NEDH/K	96
NP9	208
ODU/N	202
OKA/Wsl	210
OM/Ztm	84
P5C	210
PVG/Pit	208

SD/Rij	204
SHR/OlaHsd	202
SHRSP/Riv	210
SR/Jr	208
SS/Jr	208
WAG/RijKyo	208
WF/Pit	84
WIST/Nhg	208
WKY/OlaHsd	202
WN/N	210
WTC/Kyo	210

Region

Nucleotide Sequences

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Create Name:

Description:

Send us a Message

Marker: D9Rat178