D19Rat67 Marker Search Result - Rat Genome Database

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General

Marker: D19Rat67

Symbol:

D19Rat67

Previously known as:

oxsts10055; R0238-D07;

RGD ID:

41528

Expected Size:

175 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	19	58,578,437 - 58,578,612	NCBI	Rnor5.0
RGSC_v3.4	19	45,567,412 - 45,567,586	RGD	RGSC3.4
RGSC_v3.1	19	45,572,293 - 45,572,467	RGD
SHRSP x BN Map	19	35.7099	RGD
SHRSP x BN Map	19	35.7099	UniSTS

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	TGGTGTCTCCCATATGCACT
Reverse Primer	ACCTCAGCTACCCACCCAT

Template	GANTCTAGAGGATCCCCACCTCAGCTACCCACCCATACACACACACACACACACACACACACAC ACACACACACCCGCGCGCATGCATGCATGCACGCGTGCGCAGAGAGATTACACGCTTGTTTTGA ATGGAAAATCATGTCATTTGCAGTTTCAGATAAAAGCATGTTTGAGTGCATATGGGAGACACCA TCAGCAACAACTTGGAGTGCAGAGTAAAACGGGTCATTAGGCTTTTGTTTGTTGGAGAGTGTCC CCCATCTGACAGCGCCGAATGGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTT CCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTA AAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTT CCAGTCG

Strain Variation

Strain, Expected Size(s)

ACI/N	233
AVN/Orl	175
BBDP/Rhw	175
BBDR/Rhw	175
BC/CpbU	175
BDIX/Han	233
BN-Lx/Cub	175
BN/SsNHsd	175
BP/Cub	233
BUF/Pit	172
COP/OlaHsd	233
DA/PitN	233

DON/Melb	233
F344/Pit	233
FHH/Eur	175
GH/Omr	233
GK/KyoSwe	175
IS/Kyo	175
LE/Mol	177
LEW/Pit	175
LH/Mav	233
LN/Mav	233
LOU/CHan	233
M520/N	233

MHS/Gib	175
MNR/N	175
MNRA/N	233
MNS/Gib	175
MR/Pit	175
NEDH/K	233
NP9	175
ODU/N	233
OKA/Wsl	233
OM/Ztm	175
P5C	175
PVG/Pit	175

SD/Rij	175
SHR/OlaHsd	175
SHRSP/Riv	233
SR/Jr	231
WAG/RijKyo	233
WF/Pit	233
WIST/Nhg	233
WKY/OlaHsd	233
WN/N	233
WTC/Kyo	175

Region

Nucleotide Sequences

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D19Rat67