D16Rat58 Marker Search Result - Rat Genome Database

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Marker: D16Rat58

Symbol: D16Rat58
Previously known as: oxsts9764; R0221-B04; 
RGD ID: 41248
Expected Size: 173 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81671,599,110 - 71,599,283 (+)Marker Load Pipeline
mRatBN7.21664,896,259 - 64,896,432 (+)MAPPERmRatBN7.2
Rnor_6.01669,058,102 - 69,058,274NCBIRnor6.0
Rnor_5.01668,734,116 - 68,734,288UniSTSRnor5.0
RGSC_v3.41669,218,407 - 69,218,766RGDRGSC3.4
RGSC_v3.41669,218,593 - 69,218,765UniSTSRGSC3.4
Celera1662,816,493 - 62,816,665UniSTS
RGSC_v3.11669,218,613 - 69,218,972RGD
SHRSP x BN Map1630.54RGD
SHRSP x BN Map1630.54UniSTS
Cytogenetic Map16q12.3-q12.4UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Activ5  
Genes:   Rab11fip1  


Annotation



Strains and Sequence

Sequence
 
Forward Primer TGCTCTTTACCTGCCTTTCC
Reverse Primer CCCTGCTGTTGTGTTAAACCT
 
Template 
TGCTGCAGGTCGACTCTAGAGGATCCCCCCCCTGCTGTTGTGTTAAACCTCATCTCCAAAACAT
TTTAGGAGCACTGTAAAGGCTATTTATCAGGAGACACCAAACTTAGTCCTAAGAGCTAGTGACA
TCAAGAAACACACACACACACACACACACACACACACACACACACACACACAGGAAAGGCAGGT
AAAGAGCAATTTGGAGGCTGCTGAGATGGTTTAGCAGATAAGGTCACTGTGACCAACCCTGAAC
TAGAGTTAGGTCCCTGGGACTCATGTGGGGGAAGAGCCAAACTGACTCAAGTTGTCCTCTGAAC
TTTACATGTGTTTTACACACACATATACACACGCAGAGAGAGAGAGAGAGAGATAAAAGGANTG
TTCCTGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTNTCCTGT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1562965Rab11fip1RAB11 family interacting protein 1167158975371620341Rat

Nucleotide Sequences
GenBank Nucleotide JH618809.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Gene 101180975 UniSTS
  498650 UniSTS