D1Rat278 Marker Search Result - Rat Genome Database

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Marker: D1Rat278

Symbol: D1Rat278
Previously known as: oxsts6652; R0098-A02; 
RGD ID: 40876
Expected Size: 138 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21165,279,278 - 165,279,420 (+)MAPPERmRatBN7.2
Rnor_6.01175,980,731 - 175,980,872NCBIRnor6.0
Rnor_5.01182,965,533 - 182,965,674UniSTSRnor5.0
RGSC_v3.41168,930,690 - 168,930,831UniSTSRGSC3.4
RGSC_v3.41168,930,689 - 168,930,831RGDRGSC3.4
Celera1163,167,625 - 163,167,766UniSTS
RGSC_v3.11169,041,353 - 169,041,494RGD
RH 3.4 Map11330.1UniSTS
RH 3.4 Map11330.1RGD
SHRSP x BN Map183.4799UniSTS
SHRSP x BN Map183.4799RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; SHR.WKY-(D1Rat420-D1Rat278)/Njs
QTLs:   Bw35   Bp246   Kidm15   Kidm19   Kidm12  
Genes:   LOC687288  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CACTGTGACACAAACAGGCC
Reverse Primer TGTATAGTCATCCCCCGACC
 
Template 
GCATGCCGCAGGTCGACTCTAGAGGATCCCCCTCCAGTTAAGTGCTCTCCTTTATAAAAATTGC
TGGGGCCCTTGGTGTCTCTTGGAAGCAATAAAACACTGACTAAGACAACCTTATCTCCAGCAAA
GTGGAAGACCAGGGTTAACACCCAAGGTTGTCCTTTGACCTCTATGCATACACACTGTGACACA
AACAGGCCTATATCCACATACATAAATGTGAACACACCACACACACACACACACACACACACAC
ACACACACACACACACACACACAGAGACAGCCAGGAAGACGGGGTCGGGGGATGACTATACAAA
TATATGTGGTAGTTCCCATACCCAAAAGTAGCCATTGATGACAACTTGAGGATGTAATGGCCTC
TTAGAGTAGTGCTTCAGAGACTTCGACATTCATATAAAGTAGGGGTACCGAGCTCGAATTCGTA
ATCATGGTCATAGCTGTTTCCTGTGTGNAATTGTTATCCGCTCACAATTCCACCAACATACGAG
CCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTNCTCAATTAATTGCGT

Region

Nucleotide Sequences
GenBank Nucleotide BX511204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 544495 UniSTS
  544499 UniSTS
  544511 UniSTS
  544513 UniSTS
  544527 UniSTS
  687288 UniSTS