D14Rat78 Marker Search Result - Rat Genome Database

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Marker: D14Rat78

Symbol: D14Rat78
Previously known as: oxsts9585; R0096-B06; 
RGD ID: 40834
Expected Size: 110 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81416,279,376 - 16,279,486 (+)Marker Load Pipeline
mRatBN7.21415,995,099 - 15,995,211 (+)MAPPERmRatBN7.2
Rnor_6.01417,499,969 - 17,500,078NCBIRnor6.0
Rnor_5.01417,417,347 - 17,417,456UniSTSRnor5.0
RGSC_v3.41417,564,856 - 17,564,965UniSTSRGSC3.4
RGSC_v3.41417,564,855 - 17,564,965RGDRGSC3.4
Celera1415,390,261 - 15,390,370UniSTS
RGSC_v3.11417,564,855 - 17,564,965RGD
SHRSP x BN Map146.9RGD
SHRSP x BN Map146.9UniSTS
Cytogenetic Map14p22UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; FHH.BN(D14Rat78-D14Hmgc4)/Mcwi
Genes:   G3bp2  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AATCATTTCAGGCCAACCTG
Reverse Primer ACATGCGAGCAAAACACTGT
 
Template 
CAAGCTGCATGCTGCAGGTCGACTCTAGAGGATCCCCACATGCGAGCAAAACACTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTAAAATAAACCTAACAACACACAGCTTCATTCTGCATTCCAGGTTG
GCCTGAAATGATTCTTTTGCCTCAGACTCGCACTGCTTCATCTTGAGGCCCGAGCCACTAAGCT
TGGCTCACGTCCTTTTTGAAGCTAAGATTCTTAGATAGCAATGTTCACAGTTGTAATTCTTGAT
AAAGTGGATGTTCTTGTCTACACTGGAAATTTTTCTATTTTTCATATTTANAAGTGAATACTGT
TGTGGTACCGNGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCG
CTCACAATTCCACACAACATNNGAGCCGGAGCATAAAGNGTAAAGCCTGGGGTGGCCTNNTGAG
TGAGNTACTCACATTNATTGCGTTGCGCTCANTGCCCGCTTTCCNGTCGGGAAAACTGTCGTNC
NCTGAATTAATGAATCGGCCCACGCGCGGGGNNAGGNGGTTTNCGTNTTGGGCGCCCGGGGGGT
TTNAAATTAACNNNGNGAAGGGNNNNNTGNTT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1309571G3bp2G3BP stress granule assembly factor 2141621668416304828Rat

Nucleotide Sequences
GenBank Nucleotide CH474060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141513759431238250Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 305240 UniSTS