D15Rat116 Marker Search Result - Rat Genome Database

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Marker: D15Rat116

Symbol: D15Rat116
Previously known as: oxsts9622; R0259-A08; 
RGD ID: 40460
Expected Size: 169 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01531,374,350 - 31,374,496NCBIRnor6.0
Rnor_5.01535,190,393 - 35,190,539UniSTSRnor5.0
RGSC_v3.41529,302,007 - 29,302,154RGDRGSC3.4
RGSC_v3.41528,537,967 - 28,538,136RGDRGSC3.4
RGSC_v3.41529,302,008 - 29,302,154UniSTSRGSC3.4
RGSC_v3.41528,537,968 - 28,538,136UniSTSRGSC3.4
Celera1526,438,501 - 26,438,647UniSTS
RGSC_v3.11528,553,667 - 28,553,836RGD
SHRSP x BN Map1524.5199UniSTS
SHRSP x BN Map1524.5199RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TCTGAGGAGTATTAGAGAAGCCTAA
Reverse Primer TTGCCTTCCCAGTTATTTGG
 
Template 
TCAGTGCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACAGCGTAAGGGCTGTCTG
AGTCAGGAGGATAAAGGGGGGAATAGCTGAGACAAAAAGCTAAAGAAAGTTAAAGGCTATCTGA
GGAGTATTAGAGAAGCCTAATACAGTAGAAGCTTATATGTGAATGTGTTTGTGTATGTGGATAT
GCATGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATATGT
GATCTGAATGAAATTGCCAAATAACTGGGAAGGCAAGAGTCCCAAGTAAACATTTCTTGTCACC
AAATGAAGCTTTCAGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGT
GAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTG
GGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCG
GGAACTGTCGTGCACTGCANNATGATCGNCANGCGCGGGAGAGCGGTTGCGTTTGGGNCAGGGT
GT

Region

Nucleotide Sequences
GenBank Nucleotide CH474156.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information