D1Rat295 Marker Search Result - Rat Genome Database

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Marker: D1Rat295

Symbol: D1Rat295
Previously known as: oxsts10168; R0237-B07; 
RGD ID: 40230
Expected Size: 167 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21207,702,246 - 207,702,413 (+)MAPPERmRatBN7.2
Rnor_6.01227,107,736 - 227,107,902NCBIRnor6.0
Rnor_5.01234,174,587 - 234,174,753UniSTSRnor5.0
RGSC_v3.41213,554,130 - 213,554,297RGDRGSC3.4
RGSC_v3.41213,554,131 - 213,554,297UniSTSRGSC3.4
Celera1205,187,092 - 205,187,258UniSTS
RGSC_v3.11213,712,561 - 213,712,727RGD
RH 3.4 Map11509.7UniSTS
RH 3.4 Map11509.7RGD
SHRSP x BN Map1107.16UniSTS
SHRSP x BN Map1107.16RGD
Cytogenetic Map1q43UniSTS
Is Marker For: Strains:   SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WKY/OlaHsd ; WTC/Kyo ; ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr
QTLs:   Rf7   Bp170  
Genes:   LOC690768   LOC686634   LOC100911030  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AATCCTCCCCATGCATGTAA
Reverse Primer CATCCTGCCTTGTTGGTTTT
 
Template 
ACGGCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTTTATTAAGTGT
ATAATGTCTCTTTCTCTTTTTCTTACCCTCTTAGCAGCTACCAAGATCCACGTGGCTTGCCATC
CTGCCTTGTTGGTTTTTTTCTTTCAAATGTTAGTAAATTTCTCTTGACTCTCCAGAGTTCTCTT
TTGAATCTGTTTTAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGAATGTGTGTTCTTACATGCATGGGGAGGATTAGTATGTGTGGTGAGTATGTTTCTGTGTG
GAGGGAGGGGCTGTGGCTGGTTGTGCAGGTGGAAGGATTTCAATTACAGGGAACACAAAGAGTT
TATGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTAT
CCGCTCACAATTCCACACAACATAGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCTAATGA
GTGAGNNCTCCATTAATGGNGGCTCACTGNCGCTTTCAGCGGGAAACTGTGTGGACGCATAATG
AATCNCAACGCGNGANAGCGNNCGTATGNCNCANGNGTTTTTTTCACC

Region

Nucleotide Sequences
GenBank Nucleotide CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100911030 UniSTS
  444944 UniSTS
  444967 UniSTS
  686634 UniSTS
  690768 UniSTS