D2Rat189 Marker Search Result - Rat Genome Database

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Marker: D2Rat189

Symbol: D2Rat189
Previously known as: oxsts10452; R0220-A07; 
RGD ID: 40024
Expected Size: 175 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2217,319,606 - 17,319,743 (+)MAPPERmRatBN7.2
Rnor_6.0214,621,328 - 14,621,464NCBIRnor6.0
Rnor_6.0214,564,017 - 14,564,153NCBIRnor6.0
Rnor_5.0214,416,543 - 14,416,679UniSTSRnor5.0
Rnor_5.0214,474,287 - 14,474,423UniSTSRnor5.0
RGSC_v3.4215,761,666 - 15,761,803RGDRGSC3.4
RGSC_v3.4215,761,667 - 15,761,803UniSTSRGSC3.4
Celera213,546,330 - 13,546,466UniSTS
RGSC_v3.1215,682,035 - 15,682,172RGD
SHRSP x BN Map21.1199RGD
SHRSP x BN Map21.1199UniSTS
Is Marker For: Strains:   AVN/Orl ; BBDP/Rhw ; BBDR/Rhw ; BC/CpbU ; COP/OlaHsd ; BDIX/Han ; BDVII/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; DA/PitN ; DON/Melb ; F344/Pit ; FHH/Eur ; IS/Kyo ; LE/Mol ; LEW/Pit ; LH/Mav ; MHS/Gib ; MNRA/N ; WN/N ; WKY/OlaHsd ; WTC/Kyo ; LOU/CHan ; MNR/N ; MR/Pit ; ODU/N ; WF/Pit ; WIST/Nhg ; SR/Jr ; MNS/Gib ; NP9 ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SHRSP/Riv ; WAG/RijKyo ; GK/KyoSwe ; M520/N ; ACI/N ; BN-Lx/Cub ; LN/Mav ; GH/Omr ; NEDH/K ; SS/Jr


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGGGGAAGGAAGGATTTTG
Reverse Primer TGTGCAACTTTTTGTTTGTTTG
 
Template 
CATGCCTGCAGGTGCGACTCTAGAGGATCCCCCTATGCATCTGTTATATATGTGTAGGGAGTCT
AGGTTCATCCTGATTGGTTCAGTCCCAGAGAGTTCTTATGGAACCAGGTTAGTTAATTCTGTGC
AACTTTTTGTTTGTTTGTTTTGCTTTGTTTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGGGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTT
TCCTTGACCTCTCTTGTTCCTTCAAAATCCTTCCTTCCCCTCTTCTGAAAAATCCTCTGAGGGG
TACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCAC
AATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAGTGAGTGAGC
TAACTCACATTAATGCGTTGCGCTCACTGCCGCTTTCCATCGGGAAACTGTCGTGCACTGCATA
ATG

Region

Nucleotide Sequences
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information