D13Rat133 Marker Search Result - Rat Genome Database

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Marker: D13Rat133

Symbol: D13Rat133
Previously known as: oxsts9428; R0113-A01; 
RGD ID: 39950
Expected Size: 115 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21383,005,889 - 83,006,034 (+)MAPPERmRatBN7.2
Rnor_6.01389,141,946 - 89,142,088NCBIRnor6.0
Rnor_5.01393,755,047 - 93,755,189UniSTSRnor5.0
RGSC_v3.41386,617,943 - 86,618,086RGDRGSC3.4
RGSC_v3.41386,617,944 - 86,618,086UniSTSRGSC3.4
Celera1382,659,564 - 82,659,706UniSTS
RGSC_v3.11386,632,132 - 86,632,274RGD
RH 3.4 Map13551.0RGD
RH 3.4 Map13551.0UniSTS
RH 2.0 Map13605.7RGD
SHRSP x BN Map1338.4998RGD
Cytogenetic Map13q24UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
Genes:   Atf6  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TCTTAACCACTGAGCCATTTTT
Reverse Primer AAAGACAACTGCCAGATGGG
 
Template 
CCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTGAGTCATAAAGTGTC
CCCCTTGAAACAGGGGCTCATTGCGACGCTTGGCTGGCCTTGAACTTATGATATAGATGAGACT
AGCCTCTCACTCTTGGAGATCCATCTGTTGCTGTGTCCTGAGTGTTGGCATTAAAGGCTGCACC
ACCACATCCCAGCTTTTAAAAAAGACAACTGCCAGATGGGGACGGGGTTAAGATTGCTCTAGGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTAAAAATGGCTCAGTG
GTTAAGAGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTG
TTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCC
TAATGAGTGAGCNAACTCACNTTAATNGCGTTGCGCNCACTGCCCGCTTTCCAGTCGGGAAACC
TGTCGTGCCAGCTGCATTANGANC

Region

Nucleotide Sequences
GenBank Nucleotide AU046924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 304962 UniSTS