D16Rat93 Marker Search Result - Rat Genome Database

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Marker: D16Rat93

Symbol: D16Rat93
Previously known as: oxsts9799; R0109-C04; 
RGD ID: 39866
Expected Size: 177 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81686,018,789 - 86,018,966 (+)Marker Load Pipeline
mRatBN7.21679,316,811 - 79,316,988 (+)MAPPERmRatBN7.2
Rnor_6.01685,005,570 - 85,005,746NCBIRnor6.0
Rnor_5.01684,455,894 - 84,456,070UniSTSRnor5.0
Celera1677,103,236 - 77,103,412UniSTS
FHH x ACI Map1647.0199RGD
FHH x ACI Map1647.0199UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TATTGCTGGTTGTTTGTGCA
Reverse Primer ACACTGAGGTGCAAGATCCC
 
Template 
CCANNGATTAATTGAACTATTTTTTTTTCGATTCGGAATGAGCGTTTATACAGCAAAACCTGTC
TGGGCTAGCTTGGGCTAACCTGGGCTGGTCAATGAAGTGCCCATGCCCGAATAGGTTCTAAGCA
ATNGGGTCTGCTACCTACTTCCATGGAGGTTGAAGGTCTGAGGTCAGAGTCAAGTTCTGCAGAC
ATAGCAGCCACCATCTCTGCATCAGCTCANGCAGCAGAAGACTGAGAGGGCGCTCTGGGGCTTC
TTTGACTGGGTGCTGTATTATCTGCCTACTGCCTTCCCTCATAACCTCATCACTTCCCAAAGCC
TCTGCTTCCAAATCCTACCACACTGAGGTGCAAGATCCCACCATATAATAGGACCTGCTCATNG
TATCACAGGATTCTGAATGAATAACGCTTGGAAGAAATTTGGGTGTATTGACTCACTTAAAAAG
CACTGTGAGGTACACACACACACACACACACACACACACACACACACACACATGCGCGCGGACG
NTGCACAAACAACCAGCAATATCAAAAAAAATCCAGGGGGGNCTGCNG

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621561Myo16myosin XVI168558642886066537Rat

Nucleotide Sequences
GenBank Nucleotide CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat


Additional Information