D14Rat75 Marker Search Result - Rat Genome Database

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General

Marker: D14Rat75

Symbol:

D14Rat75

Previously known as:

R0097-D02; oxsts9582;

RGD ID:

39646

Expected Size:

265 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	11,068,806 - 11,069,071 (+)	Marker Load Pipeline
Rnor_6.0	14	12,414,655 - 12,414,917	NCBI	Rnor6.0
Rnor_5.0	14	12,357,955 - 12,358,217	UniSTS	Rnor5.0
RGSC_v3.4	14	12,118,227 - 12,118,490	RGD	RGSC3.4
RGSC_v3.4	14	12,118,228 - 12,118,490	UniSTS	RGSC3.4
Celera	14	10,853,689 - 10,853,911	UniSTS
RGSC_v3.1	14	12,118,227 - 12,118,490	RGD
RH 2.0 Map	4	946.1	RGD
SHRSP x BN Map	14	6.9	RGD

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	TGACCCTTCAGTTGCAAATTC
Reverse Primer	GCACACTGCAGTGAGACAAAA

Template	CNTTCCCCTNTTGTATTTTTACCAGGTAACAACCGTAATGTGTTTTGGAGTGTTCAGAAGCACA CTGCAGTGAGACAAAAATTCTTGATGTCTGAAAGCATGTGAGACTTTAATTAAATGACCAGATA AAAAGTAGGCCATTTCCAAGATCTTGTGTCAGTGTGTGTGTATATCATCAGTATCAAAATCAGA AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGATTTTCTGAATTTGCAACTGAAGGGTCATAGTACTAAAGT TTTGTTGTGGAATGGGAATTGACTGAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCT GTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAG TGTANAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCGCG CTTTCCAGTCGGGANACTGTCGTGCCAGCTGCATTAATGAATCGGCCACGCGC

Strain Variation

Strain, Expected Size(s)

ACI/N	250
AVN/Orl	250
BBDP/Rhw	248
BBDR/Rhw	250
BC/CpbU	248
BDIX/Han	248
BDVII/Cub	246
BN-Lx/Cub	262
BN/SsNHsd	262
BP/Cub	244
BUF/Pit	246
COP/OlaHsd	246
DA/PitN	252

DON/Melb	244
F344/Pit	244
FHH/Eur	248
GH/Omr	246
GK/KyoSwe	232
IS/Kyo	230
LE/Mol	246
LEW/Pit	248
LH/Mav	226
LN/Mav	222
LOU/CHan	246
M520/N	246
MHS/Gib	250

MNR/N	232
MNRA/N	232
MNS/Gib	222
MR/Pit	232
NEDH/K	246
NP9	248
ODU/N	248
OKA/Wsl	222
OM/Ztm	222
P5C	248
PVG/Pit	246
SD/Rij	246
SHR/OlaHsd	246

SHRSP/Riv	222
SR/Jr	222
SS/Jr	248
WAG/RijKyo	246
WF/Pit	222
WIST/Nhg	222
WKY/OlaHsd	246
WN/N	244
WTC/Kyo	248

Region

Nucleotide Sequences


GenBank Nucleotide	CH474022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3957878	21572472	Rat
2293089	Iddm31	Insulin dependent diabetes mellitus QTL 31	4.7		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	14	3957878	18558812	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3957878	31121464	Rat
71115	Niddm15	Non-insulin dependent diabetes mellitus QTL 15	4.8		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	11334906	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	17877928	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3957878	24886169	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D14Rat75