DXRat76 Marker Search Result - Rat Genome Database

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Marker: DXRat76

Symbol: DXRat76
Previously known as: oxsts11809; R0091-C12; 
RGD ID: 39482
Expected Size: 205 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X13,100,703 - 13,100,908 (+)Marker Load Pipeline
mRatBN7.2X10,428,024 - 10,428,229 (+)MAPPERmRatBN7.2
Rnor_6.0X11,381,382 - 11,381,586NCBIRnor6.0
Rnor_5.0X12,179,488 - 12,179,692UniSTSRnor5.0
RGSC_v3.4X22,515,015 - 22,515,219UniSTSRGSC3.4
RGSC_v3.4X22,515,014 - 22,515,219RGDRGSC3.4
CeleraX10,951,919 - 10,952,123UniSTS
RGSC_v3.1X22,568,268 - 22,568,712RGD
SHRSP x BN MapX0.0RGD
SHRSP x BN MapX0.0UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGGCAGAAGCTGGCTATGAA
Reverse Primer AACGAAACTAGGCGTGCATT
 
Template 
AGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACACTTACTATCTTCAGACACACCAGA
AGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC
AGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCTAGACCCCGACAAGA
TTTAAAAAAAGAAAAAGAAAAACGAAACTAGGCGTGCATTCCCACTCTAAACTTTCTATGCTAG
ATACTGTGAGACAGAGAGTGAACGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGCTGTATTGATAATGATGATCAGATCCCAAGTGTGAACTAAGCCTCTCTCTAATAA
TATACAGTTTTCCTATTCATAGCCAGCTTCTGCCTTCTTAAAATAATAGCTAAGAAAACAGGGG
ATATTTTTGGTTTCTCCAAAAATATTAGATGGTACTCCACCACTGAGCTACAATCTTGGCTCCC
AAATTTATTTCTACCTTCTTGGTTAATATCTGTCTTAGATAGTGTTCTATTGTTCTGAAGAGAC
TCCATGACCACAGCNCTCTTAANAGGNNGCNTTNATTGGNGCTGCNACAGTNC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
402120440LOC134484123uncharacterized LOC134484123X1308209913133111Rat

Nucleotide Sequences
GenBank Nucleotide CH474009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149314046933Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat


Additional Information