DXRat116 Marker Search Result - Rat Genome Database

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Marker: DXRat116

Symbol: DXRat116
Previously known as: oxsts11752; R0090-B05; 
RGD ID: 39434
Expected Size: 222 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X132,144,733 - 132,144,955 (+)Marker Load Pipeline
mRatBN7.2X127,266,809 - 127,267,035 (+)MAPPERmRatBN7.2
Rnor_6.0X134,919,683 - 134,919,904NCBIRnor6.0
Rnor_5.0X134,991,464 - 134,991,685UniSTSRnor5.0
RGSC_v3.4X134,451,077 - 134,451,299RGDRGSC3.4
RGSC_v3.4X134,451,078 - 134,451,299UniSTSRGSC3.4
CeleraX126,217,426 - 126,217,647UniSTS
RGSC_v3.1X134,524,511 - 134,524,732RGD
RH 3.4 MapX914.0UniSTS
RH 3.4 MapX914.0RGD
RH 2.0 Map21696.6RGD
FHH x ACI MapX39.13RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ATGGTGATGGTGATGCACAC
Reverse Primer ATATGGGAGAAAACCCCCAG
 
Template 
AAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACCAAGAGCCTAAGATCTGCCCTAGA
GGAGTCTACAATTCAATATGGGAGAAAACCCCCAGACACCAGTCTGTGGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGGATCTAATTGTATAGATCAGAATGGCATGGAATTCCATATGTAGACACAAGATTAGCCTCA
AACACATAGAAATTTGTGTGCATCACCATCACCATGCTGGGCCCAGAACATATTTAATACATAT
GGGTGTGTGTGTGCATGTGGACACACATGTATGTGTGTGTGGGTACCGAGCTCGAATTCGTAAT
CATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGC
CGGAAGCATAAGTGTANGCCTGGGGTGCTAATGAGTGAGCTNCTCCATTANTGCGTGCCCTGCG
TTTCATCGGAACTGCGTGCANTGNTTATGNNCGNNNCGGCGNGAGAGGGNTGNTATGG

Region

Nucleotide Sequences
GenBank Nucleotide CH473991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Additional Information