D20Rat55 Marker Search Result - Rat Genome Database

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Marker: D20Rat55

Symbol: D20Rat55
Previously known as: oxsts10370; R0089-D11; 
RGD ID: 39424
Expected Size: 207 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22042,886,819 - 42,887,012 (+)MAPPERmRatBN7.2
Rnor_6.02044,555,562 - 44,555,754NCBIRnor6.0
Rnor_5.02046,279,994 - 46,280,186UniSTSRnor5.0
RGSC_v3.42043,622,154 - 43,622,346UniSTSRGSC3.4
RGSC_v3.42043,622,153 - 43,622,346RGDRGSC3.4
Celera2043,601,937 - 43,602,129UniSTS
RGSC_v3.12043,645,165 - 43,645,357RGD
RH 3.4 Map20456.5UniSTS
RH 3.4 Map20456.5RGD
RH 2.0 Map20505.7RGD
SHRSP x BN Map2034.4RGD
Cytogenetic Map20q13UniSTS
Is Marker For: Strains:   PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OM/Ztm ; P5C
Genes:   Fyn  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCTACACACCTGTGCACACA
Reverse Primer ACCCAGACTTCTTGCCTCCT
 
Template 
TGCGAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATGGGCACGTGTGGGGACTTGGTCACCC
AGACTTCTTGCCTCCTTCATTTCTTTAGTGAGTGCAAAAGAAGCAGTAACTGGTTTCTAGCTTA
CTTTTACCTAAGACAGAAAATGATAAGTTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGCGCGCCTGAACATGCATGTGTGTGCTTGTGTGTCCATGCAGAAGAGTCACGCTTGTGTGCAC
AGGTGTGTAGGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAA
TTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGT
GCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAA
ACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGCGGTTTGCGTATTGG

Region

Nucleotide Sequences
GenBank Nucleotide CH474051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 25150 UniSTS