D3Rat169 Marker Search Result - Rat Genome Database

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General

Marker: D3Rat169

Symbol:

D3Rat169

Previously known as:

oxsts10711; R0089-C10;

RGD ID:

39408

Expected Size:

245 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
SHRSP x BN Map	3	47.2698	RGD
SHRSP x BN Map	3	47.2698	UniSTS

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	GGCTACCAGTGCGATAAACC
Reverse Primer	GGCCGCACTTGTAACCTC

Template	GACNNAGAGGATCCCCCNGATGTGGGGGCCGCACTTGTAACCTCANTGATANGGAGGANAAAAN GACAGACATTGGTTAGTCAACCTACCTCAGGCTGAGANGCCTTATCTCGAAAAAAAAAAAAAAG TAAATTTATNAGTANGACCTNGGAGTGGTGCCATTCTCCACACACATNGTTACAAATGAACCGC ACTGGCAAACACACGCACGCGCACACACACACACACACACACACACACGGNGANGGGTAGGTTT ATCGCACTGGTAGCCTTCTTAAGANGCTGAGAGGGGTACCGAGCGGCGGATTCNTAATCGTGNT CATAGCTNTTTCCTGTGTGAAATTGTNNTCCGCTCGGCNGTTCCGCACGGCATAGGGGCCGGGG GCANAAGGTGTANAGCCTGGGGTGCCTAATNGGGNGGCTAACTCACATTAATTGCGTGGCGCTC AGGGCCCGCTGNNCAGTCGGGGGNACCTNTCGNGNNGGCTNNNNTANTNNAGNGGNNNNGGGNG GGGGGNGGGCGNNTTCNNGGGGGNCCGGGTGGTNTNNTTTNGNGGGGGNGGGGNGGTNNNGNGC TTNGCGCTTGCCCNGGGGGTTNNNGNG

Strain Variation

Strain, Expected Size(s)

ACI/N	247
AVN/Orl	247
BBDP/Rhw	247
BBDR/Rhw	247
BC/CpbU	247
BDIX/Han	247
BDVII/Cub	247
BN-Lx/Cub	247
BN/SsNHsd	247
BP/Cub	256
BUF/Pit	247
COP/OlaHsd	251

DA/PitN	247
DON/Melb	249
F344/Pit	249
FHH/Eur	247
GH/Omr	247
GK/KyoSwe	247
IS/Kyo	229
LE/Mol	249
LEW/Pit	249
LH/Mav	229
LN/Mav	245
LOU/CHan	249

M520/N	229
MHS/Gib	249
MNR/N	256
MNRA/N	249
MNS/Gib	229
MR/Pit	249
NP9	249
ODU/N	249
OKA/Wsl	270
OM/Ztm	264
P5C	249
PVG/Pit	253

SD/Rij	249
SHR/OlaHsd	270
SHRSP/Riv	270
SR/Jr	245
SS/Jr	229
WAG/RijKyo	249
WF/Pit	249
WIST/Nhg	249
WKY/OlaHsd	249
WN/N	249
WTC/Kyo	249

Region

Nucleotide Sequences

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	444910	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D3Rat169