D9Rat108 Marker Search Result - Rat Genome Database

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Marker: D9Rat108

Symbol: D9Rat108
Previously known as: oxsts11629; R0088-C07; 
RGD ID: 39380
Expected Size: 133 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29104,821,531 - 104,821,652 (+)MAPPERmRatBN7.2
Rnor_6.09112,943,167 - 112,943,287NCBIRnor6.0
Rnor_5.09112,477,897 - 112,478,017UniSTSRnor5.0
RGSC_v3.49103,918,135 - 103,918,256RGDRGSC3.4
RGSC_v3.49103,918,136 - 103,918,256UniSTSRGSC3.4
Celera9102,215,146 - 102,215,266UniSTS
RGSC_v3.19104,127,615 - 104,127,736RGD
SHRSP x BN Map973.8499RGD
SHRSP x BN Map973.8499UniSTS
Is Marker For: Strains:   AVN/Orl ; BBDP/Rhw ; BBDR/Rhw ; COP/OlaHsd ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; DA/PitN ; DON/Melb ; F344/Pit ; FHH/Eur ; IS/Kyo ; LE/Mol ; LEW/Pit ; LH/Mav ; MHS/Gib ; MNRA/N ; WN/N ; WKY/OlaHsd ; WTC/Kyo ; LOU/CHan ; MNR/N ; MR/Pit ; ODU/N ; WF/Pit ; WIST/Nhg ; SR/Jr ; MNS/Gib ; NP9 ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SHRSP/Riv ; WAG/RijKyo ; GK/KyoSwe ; M520/N ; ACI/N ; BN-Lx/Cub ; LN/Mav ; GH/Omr ; NEDH/K ; SS/Jr
QTLs:   Bp185  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGAGAGCAAAGCACACAGGC
Reverse Primer CCCATCTCCCTAAACTCAACC
 
Template 
TCTAGAGGATCCCCTATTTCTCTGTCTTTTCCTTCTACGTGCTTTCTTTCTTTTTCCCATCTCC
CTAAACTCAACCAGGATTTACAGGAGAGAGGGACTTTACCATCTCACACACACACACACACACA
CCCACTGCACTCAAGCGCTCGCACGGTGCCCCTCCTCACAGCCTGTGTGCTTTGCTCTCTTCAT
ATATGATTGACAGGGAGAAAAAAAATGAGAAAGGGGTACCGAGCTCGAATTCGTAATCATGGTC
ATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCCACACAANATACGAGCNCGGAA
GCNTAAAGTGTAAAGCCTGGGGTGCCTAATGCAGTGNGCNTAACTCACCATTAACTTGNGTTGC
GNCTCC

Region

Nucleotide Sequences
GenBank Nucleotide CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 444933 UniSTS