D15Rat69 Marker Search Result - Rat Genome Database

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General

Marker: D15Rat69

Symbol:

D15Rat69

Previously known as:

oxsts9694; R0082-B11;

RGD ID:

39014

Expected Size:

148 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	12,067,038 - 12,067,186 (+)	Marker Load Pipeline
mRatBN7.2	15	9,636,306 - 9,636,454 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	10,885,780 - 10,885,927	NCBI	Rnor6.0
Rnor_5.0	15	14,926,042 - 14,926,189	UniSTS	Rnor5.0
RGSC_v3.4	15	11,086,566 - 11,086,714	RGD	RGSC3.4
RGSC_v3.4	15	11,086,567 - 11,086,714	UniSTS	RGSC3.4
Celera	15	9,649,912 - 9,650,059	UniSTS
RGSC_v3.1	15	11,086,566 - 11,086,714	RGD
RH 2.0 Map	15	29.8	RGD
SHRSP x BN Map	15	6.2099	RGD

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	AGCACAGTGGAAGGCTCAGT
Reverse Primer	TTGTGTTGCCTGCCTGTAAG

Template	GTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACAGAAGTTCTTGCTGTGCTC TGAGCCCAGTGTCTCTGTTTGTCAAGGCGTCCTCTTCCCAGTCCATGCATTTCTCCGCCAGGCT GATCTTGTTTCTTCACAGCCTCAGATAGGTTGTTTGTGTTGCCTGCCTGTAAGCCTTTTCAGGA CCACAGATATGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA GAAGACAGGCTTCAGATCCTCTTTCCAACTGAGCCTTCCACTGTGCTCCTCAGTGACCTTCCCA GTGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGC TCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGTCTAATGAGT GAGCTAACTCACATTAATTGCGTTGCGCTCACTGCTCGCTTTCCAGTCGGGAAACTGTCGTGCC AGTGCATTAATGANCGGCCACGCGCGGGAGAGCNGTNGCGTATTGNCGCAGGGTG

Strain Variation

Strain, Expected Size(s)

ACI/N	150
AVN/Orl	146
BBDP/Rhw	150
BBDR/Rhw	150
BC/CpbU	144
BDIX/Han	148
BDVII/Cub	150
BN-Lx/Cub	150
BN/SsNHsd	150
BP/Cub	150
BUF/Pit	120
COP/OlaHsd	148

DA/PitN	150
DON/Melb	150
F344/Pit	150
FHH/Eur	150
GH/Omr	150
GK/KyoSwe	144
IS/Kyo	128
LE/Mol	162
LEW/Pit	150
LH/Mav	162
LN/Mav	162
LOU/CHan	150

M520/N	150
MHS/Gib	150
MNR/N	150
MNRA/N	150
MNS/Gib	146
MR/Pit	150
NEDH/K	120
NP9	150
ODU/N	144
OKA/Wsl	144
OM/Ztm	160
P5C	150

PVG/Pit	150
SD/Rij	162
SHR/OlaHsd	144
SHRSP/Riv	144
SR/Jr	150
SS/Jr	162
WAG/RijKyo	150
WF/Pit	150
WKY/OlaHsd	144
WN/N	150
WTC/Kyo	144

Region

Nucleotide Sequences


GenBank Nucleotide	CH474010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
1300142	Bp191	Blood pressure QTL 191	3.14		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	15	1	15177511	Rat

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D15Rat69