D11Rat33 Marker Search Result - Rat Genome Database

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Marker: D11Rat33

Symbol: D11Rat33
Previously known as: oxsts9270; R0080-D03; 
RGD ID: 38906
Expected Size: 200 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01184,589,113 - 84,589,310NCBIRnor5.0
Rnor_5.01184,421,239 - 84,421,440NCBIRnor5.0
Rnor_5.01184,421,240 - 84,421,440NCBIRnor5.0
Rnor_5.01184,646,557 - 84,646,747NCBIRnor5.0
Rnor_5.01184,646,556 - 84,646,747NCBIRnor5.0
Rnor_5.01184,589,114 - 84,589,310NCBIRnor5.0
RGSC_v3.41179,961,389 - 79,961,588UniSTSRGSC3.4
RGSC_v3.41180,159,574 - 80,159,763UniSTSRGSC3.4
RGSC_v3.41179,961,388 - 79,961,588RGDRGSC3.4
RGSC_v3.41180,159,573 - 80,159,763RGDRGSC3.4
Celera1176,647,405 - 76,647,604UniSTS
Celera1176,842,682 - 76,842,871UniSTS
RGSC_v3.11180,018,821 - 80,019,177RGD
SHRSP x BN Map1135.6998RGD
SHRSP x BN Map1135.6998UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
Genes:   LOC681516  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCCACAAATGCTTACAAGGT
Reverse Primer TGGGTAAGACTGGGTAGGCT
 
Template 
CTGCAGGTCGACTCTAGAGGATCCCCCCTGCCCGGATGCTTCGATGATGCCATGCTCCCGCCTT
GATGACACTGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTCATCCTTTATAAA
AACTCATGTTGGTCGTGGTGTCTGTTCACAGCAACAAGACCCTACCTAAGACACTGGGTAAGAC
TGGGTAGGCTACTTCTACCTACCTCTTTTTATTGTGTTACTGGAGCAAGTTAGAGGACAGATTG
TGTGTGNGGNNNGNNNNNGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCAATGTTTCCCAA
AGTCATTTAGAAGGTAGCATTTACTCTCACGTTCACCACAATACCTTGTAAGCATTTGTGGGGG
GTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCA
CAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCTAATGAGTGNGC
NNNNNCATTAATNGNNTTGNCTCACTGCCGCTTTCAGTCGGGA

Region

Nucleotide Sequences
GenBank Nucleotide JH617358.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH617359.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 681516 UniSTS