D5Rat116 Marker Search Result - Rat Genome Database

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Marker: D5Rat116

Symbol: D5Rat116
Previously known as: R0078-A05; oxsts7147; 
RGD ID: 38744
Expected Size: 236 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr856,922,282 - 6,922,518 (+)Marker Load Pipeline
mRatBN7.252,138,965 - 2,139,201 (+)MAPPERmRatBN7.2
Rnor_6.051,525,098 - 1,525,333NCBIRnor6.0
Rnor_5.051,521,341 - 1,521,576UniSTSRnor5.0
RGSC_v3.451,220,773 - 1,221,009RGDRGSC3.4
RGSC_v3.451,220,774 - 1,221,009UniSTSRGSC3.4
Celera51,773,867 - 1,774,102UniSTS
RGSC_v3.151,220,773 - 1,221,009RGD
SHRSP x BN Map51.1599RGD
SHRSP x BN Map51.1599UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Eutr1   Pur18  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGGAATAGTCTGGTGGTCTTAAAA
Reverse Primer TCTGTTGATGGACTTGGGTG
 

Region

Nucleotide Sequences
GenBank Nucleotide JH614900.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)519895442Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303338 UniSTS
  100303441 UniSTS