D9Rat60 Marker Search Result - Rat Genome Database

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Marker: D9Rat60

Symbol: D9Rat60
Previously known as: oxsts11715; R0077-C10; 
RGD ID: 38716
Expected Size: 147 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,035,934 - 48,036,057 (+)MAPPERmRatBN7.2
Rnor_6.0952,896,774 - 52,896,896NCBIRnor6.0
Rnor_6.0952,821,860 - 52,821,982NCBIRnor6.0
Rnor_5.0952,562,590 - 52,562,712UniSTSRnor5.0
Rnor_5.0952,487,676 - 52,487,798UniSTSRnor5.0
RGSC_v3.4944,979,838 - 44,979,961RGDRGSC3.4
RGSC_v3.4944,979,839 - 44,979,961UniSTSRGSC3.4
Celera945,703,284 - 45,703,406UniSTS
RGSC_v3.1944,981,242 - 44,981,612RGD
SHRSP x BN Map941.0698UniSTS
SHRSP x BN Map941.0698RGD
FHH x ACI Map932.43RGD
Cytogenetic Map9q22UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; M520/N ; WN/N ; LH/Mav ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; ODU/N ; OM/Ztm ; PVG/Pit ; SD/Rij ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
Genes:   Slc40a1   LOC100911874  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGGCATAAGATCCTGGGTT
Reverse Primer CTATGTTTGCATGTATATGTGTGTG
 
Template 
AGCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTAAATCCGTCCCCA
TAATCTCCGTCAGCCTGCTGTTTGCAGGAGTCATTGCTGCTAGAATCGGTAAGAACTCTCTTTC
TGCATACTAAAAAATTACAAACATCATTTTAAAACCTAATGTAGACAATTCAACAATACATTAT
CTGAAATACTTTACAGATATTTATTTAGGCAAAACCCACAGTTTATGTATAGAATTTACTCTCT
AAACATAAAATTTCATGTAATAGTTTAAACTATGTTTGCATGTATATGTGTGTGTATGTAAGTG
TTTAGTTTTTTTCTAAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGGTGTGGTGAGAGAGAACCCAGGATCTTATGCCTGTTAAGCCAGTGGTACC
GAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT
CCACACAACATACGGCCGGGACATAGAGTGTANGCCTGGGGTGCCC

Region

Nucleotide Sequences
GenBank Nucleotide JH616777.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100911874 UniSTS
  170840 UniSTS