D20Rat43 Marker Search Result - Rat Genome Database

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Marker: D20Rat43

Symbol: D20Rat43
Previously known as: oxsts10358; R0077-C09; 
RGD ID: 38714
Expected Size: 256 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82031,754,967 - 31,755,223 (+)Marker Load Pipeline
mRatBN7.22031,212,267 - 31,212,523 (+)MAPPERmRatBN7.2
Rnor_6.02032,893,013 - 32,893,268NCBIRnor6.0
Rnor_5.02034,674,602 - 34,674,857UniSTSRnor5.0
RGSC_v3.42030,535,030 - 30,535,527RGDRGSC3.4
RGSC_v3.42030,535,164 - 30,535,419UniSTSRGSC3.4
Celera2032,623,606 - 32,623,861UniSTS
RGSC_v3.12030,548,964 - 30,549,219RGD
RH 3.4 Map20313.1RGD
RH 3.4 Map20313.1UniSTS
RH 2.0 Map20337.7RGD
FHH x ACI Map2015.7299RGD
Is Marker For: Strains:   ACI/N ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; ODU/N ; OM/Ztm ; P5C ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AGGAAGTTGAGATCAGGGCA
Reverse Primer GATTTGGCTTCTGTCCTCCA
 
Template 
TCAGAGGATCCCCACTTTTTTACTTTCAATTTTACAGGAATCATTGGGTTGGGAAGGTGGCTCA
GAGGGTGAAAGGACTTCCTTCCAAGCCTGATGGCTTGGGTTACAGTCCTGAATCTCATGGAAAA
AAGAGAGCTGAGCTCTGAGATTTGGCTTCTGTCCTCCACATGCATGTTGGGGCACGCGCACACA
CACACACACACACACACACACACACACACAAATAAATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAAAATTAGGATAGTTATTTTTAAACCTTTGAGTTAGACAAGACAGGCAAAA
GTAACACAAGCATCACATAAAATATTATTCACACCATAAGAAGATACATGTGCCCTGATCTCAA
CTTCCTTCATATAATAATCTTCAGGTATAATCTATCTTAGGTAAAATAATTATATTCATTCATT
CATTCACCATCTATTAAAAACCATTAGGGCTAGAGAGATGTCTCAGTGGTGGGTACGAGCTCGA
ATTCGTAATCATGGTCATAGCTGTNCCTG

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
402072030LOC134483923glyceraldehyde-3-phosphate dehydrogenase-like203145766131928028Rat
7617643LOC102555143uncharacterized LOC102555143203170510931757697Rat

Nucleotide Sequences
GenBank Nucleotide CH474016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat


Additional Information