Marker: D19Rat28 |
| Symbol: |
D19Rat28 |
| Previously known as: |
R0060-D02; oxsts10029;
|
| RGD ID: |
37706 |
| Expected Size: |
182 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
GRCr8 | 19 | 4,861,545 - 4,861,727 (+) | Marker Load Pipeline | | mRatBN7.2 | 19 | 4,855,257 - 4,855,433 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 19 | 5,135,198 - 5,135,379 | NCBI | Rnor6.0 | Rnor_5.0 | 19 | 5,130,317 - 5,130,498 | UniSTS | Rnor5.0 | RGSC_v3.4 | 19 | 5,035,158 - 5,035,340 | RGD | RGSC3.4 | RGSC_v3.4 | 19 | 5,035,159 - 5,035,340 | UniSTS | RGSC3.4 | Celera | 19 | 4,820,914 - 4,821,095 | UniSTS | | RGSC_v3.1 | 19 | 5,037,600 - 5,037,781 | RGD | | RH 3.4 Map | 19 | 0.0 | UniSTS | | RH 3.4 Map | 19 | 0.0 | RGD | | RH 2.0 Map | 19 | 0.0 | RGD | | SHRSP x BN Map | 19 | 2.1999 | RGD | |
|
| Is Marker For: |
Strains:
ACI/N ;
AVN/Orl ;
BBDR/Rhw ;
BBDP/Rhw ;
BC/CpbU ;
BDIX/Han ;
BDVII/Cub ;
BN-Lx/Cub ;
BN/SsNHsd ;
BP/Cub ;
BUF/Pit ;
COP/OlaHsd ;
DA/PitN ;
FHH/Eur ;
F344/Pit ;
GH/Omr ;
DON/Melb ;
M520/N ;
IS/Kyo ;
WN/N ;
LH/Mav ;
LE/Mol ;
LEW/Pit ;
LOU/CHan ;
LN/Mav ;
MHS/Gib ;
MNR/N ;
MNRA/N ;
MNS/Gib ;
MR/Pit ;
NEDH/K ;
NP9 ;
ODU/N ;
OKA/Wsl ;
OM/Ztm ;
P5C ;
PVG/Pit ;
SD/Rij ;
SHR/OlaHsd ;
SR/Jr ;
SHRSP/Riv ;
SS/Jr ;
WAG/RijKyo ;
WF/Pit ;
WIST/Nhg ;
WKY/OlaHsd ;
WTC/Kyo
QTLs:
Srcrt9
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat. |
Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
|
| 3. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 4. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 5. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 6. |
UniSTS Pipeline |
RGD automated pipelines
|
| 7. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 8. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
TGTTCCTGGGACCTGATCTT |
| Reverse Primer |
TGTGCATGGTACTGTGAGTGTG |
| |
| Template |
CTAACTAAACCAATGAATAGGATTCAATTTTAGGTTGTATGCAGTGTGTGCATGGTACTGTGAG
TGTGTATGTTTGCACATGTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCAAGGAAAACTTAAAGATC
TAGGCACTACATTAAAACATTTCTTTTTATTTAAGATCAGGTCCCAGGAACAACAAACTTTGTA
AGGGCTTTTATGACAGACTGGAAAACTGAGTTTCAAATGAAAAGAACATTAGGGGTACCGAGCT
CGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACA
CAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGACTAACTCACAT
TAATTGCGTTGCGCTCCTGCCGCTTTCCAGTCGGGAAACTNNCGNGCCACTGCATTAATGATCG
GCCACGCGCGGGAGANNNGTNNCTATGGCGCAGGGTGTTTTCTNCACAGGAGANGGNAC
|
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
| 7529350 | LOC102546689 | uncharacterized LOC102546689 | 19 | 4846896 | 4865871 | Rat | |
QTLs in Region (GRCr8)
| 1549847 | Bss8 | Bone structure and strength QTL 8 | 4 | | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 19 | 1 | 31969901 | Rat | | 7411590 | Foco7 | Food consumption QTL 7 | 6.8 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 19 | 1 | 24694445 | Rat | | 7247442 | Uae39 | Urinary albumin excretion QTL 39 | | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 19 | 2194317 | 74246245 | Rat | | 10054132 | Srcrt9 | Stress Responsive Cort QTL 9 | 2.87 | 0.0017 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 19 | 1 | 27361636 | Rat | | 1331737 | Uae29 | Urinary albumin excretion QTL 29 | 5.5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 19 | 36289 | 74246245 | Rat | | 724566 | Uae12 | Urinary albumin excretion QTL 12 | 5 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 19 | 2194317 | 74246245 | Rat | |
