D13Rat192 Marker Search Result - Rat Genome Database

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Marker: D13Rat192

Symbol: D13Rat192
Previously known as: oxsts9487; R0058-C10; 
RGD ID: 37576
Expected Size: 196 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81398,253,807 - 98,254,003 (+)Marker Load Pipeline
mRatBN7.21395,722,244 - 95,722,440 (+)MAPPERmRatBN7.2
Rnor_6.013104,392,076 - 104,392,271NCBIRnor6.0
Rnor_5.013109,040,421 - 109,040,616UniSTSRnor5.0
RGSC_v3.413100,133,218 - 100,133,413UniSTSRGSC3.4
RGSC_v3.413100,133,217 - 100,133,413RGDRGSC3.4
Celera1395,245,659 - 95,245,854UniSTS
RGSC_v3.113100,322,261 - 100,322,456RGD
RH 3.4 Map13650.0RGD
RH 3.4 Map13650.0UniSTS
FHH x ACI Map1353.87UniSTS
FHH x ACI Map1353.87RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; SS.BN-(D13Rat57-D13Rat192)/Mcwi ; SS.BN-(D13Rat183-D13Rat192)/Mcwi ; SS.BN-(D13Got51-D13Rat192)/Mcwi


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGCTGAGCACTAACGGAATG
Reverse Primer GATGTCTCGACTTCCCCAAA
 
Template 
AGTGCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGTATCAGGGCAGGGGATCT
TCCTGCTGTGGTGGGATCTATGCTGAGCACTAACGGAATGAATCAGGCAACTATTGGTGCTTAC
TATGCCAGTAAACAATATGGGTCAACAATCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGAGAGAATAATGGAATA
ATATTTGGGGAAGTCGAGACATCAATGTGACTAAGAGGAAAGACGAATGATGANGAGACAGGGA
GGAGCCACGGTCAAAGGGGTTGGGGCACAAAAGACTATGAGNGGGGGNACCGAGCTCGAATTCG
TAATCATGGTCAAAACTTGTTCCNGTGNNAATTTGGTTANNCGCTCACAATTCCACACAAANAN
NGAGCCCGGNAGCAAAAAAGTGNAANCCNGGGGNNCNAATNNGGNAGCNNNCNCACCANAATGG
GTTGNCNCATNCCGTTTCCANNGGGAANTTTTTTCCAANNNNTAANGANCGGNNTTTNTTNGNN
NGGGGTTTNTTTTNGNGCNGGGGGTTTTCTTTTCCCNNNAGAGGGAAANTTTCCCTTANNNNNC
C

Region

Nucleotide Sequences
GenBank Nucleotide CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Additional Information