DXRat71 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: DXRat71

Symbol: DXRat71
Previously known as: oxsts11805; R0057-B05; 
RGD ID: 37492
Expected Size: 186 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X89,968,824 - 89,969,010 (+)Marker Load Pipeline
mRatBN7.2X85,748,049 - 85,748,235 (+)MAPPERmRatBN7.2
Rnor_6.0X92,278,466 - 92,278,651NCBIRnor6.0
Rnor_5.0X92,181,026 - 92,181,211UniSTSRnor5.0
RGSC_v3.4X109,514,212 - 109,514,397UniSTSRGSC3.4
RGSC_v3.4X109,514,211 - 109,514,397RGDRGSC3.4
CeleraX86,894,733 - 86,894,918UniSTS
RGSC_v3.1X109,587,644 - 109,587,830RGD
RH 3.4 Map21066.1UniSTS
RH 3.4 Map21066.1RGD
RH 2.0 Map21568.7RGD
FHH x ACI MapX27.91RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GCCAGGATAAACTGTGTCCC
Reverse Primer TGAAACCCTCGGTTTTTCTG
 
Template 
CNTCTAGTAGGATNATAGACTTTACACAATTTTTCAGTATTTTTAGATAGAATTTCNCNCAAGT
AGTTATGTCTTTATTTGACTTTTTGTTCATGGGACTTGTTCCAATGGTCTGTAAATGAAACCCT
CGGTTTTTCTGTCTCAAATTTACACACACACACACACACACACACACACACACACACACACAAA
CACAAACACGCACACACACAATTGTGGNATACACTGTACAAATAATNGATTGGAAAAAACTTAA
TGGAGAAAGGGTTTACTTTGTCCCATAATNCAGGGACACAGTTTATCCTGGCAAGGAAGATAGA
GAAGCAGTAACTGCTGTGAGGGANCCGAGCTCGAATACGATATCATGGNCAAAGCGGTNTCCTG
NGAGAAAGTGTAATCCGCGCNGAATTCCACACAACATACGAGCCGGAANCATNNAGTGTAAAGC
CTGGGGTGCCTNATGAGTGNGCNAACTCACAGTAATTGCGTGGCNCANNGCGCGCNNNCAGTCG
GGAAACTGTNGTNCANTGCANAATGATCGGCNCGCGNGGGAG

Region

Nucleotide Sequences
GenBank Nucleotide CH473969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat


Additional Information