DXRat44 Marker Search Result - Rat Genome Database

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Marker: DXRat44

Symbol: DXRat44
Previously known as: oxsts7603; R0052-C05; 
RGD ID: 37348
Expected Size: 233 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X13,983,399 - 13,983,632 (+)Marker Load Pipeline
mRatBN7.2X11,310,806 - 11,311,041 (+)MAPPERmRatBN7.2
Rnor_6.0X12,306,530 - 12,306,762NCBIRnor6.0
Rnor_5.0X13,098,741 - 13,098,973UniSTSRnor5.0
RGSC_v3.4X23,428,395 - 23,428,628RGDRGSC3.4
RGSC_v3.4X23,428,396 - 23,428,628UniSTSRGSC3.4
CeleraX11,929,674 - 11,929,888UniSTS
RGSC_v3.1X23,481,713 - 23,481,946RGD
RH 3.4 MapX66.7UniSTS
RH 3.4 MapX66.7RGD
RH 2.0 Map2149.3RGD
SHRSP x BN MapX0.08RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WKY/OlaHsd


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TAACTGTGCCCCCAATAAGG
Reverse Primer CTGGGTTCTGTCCTGATGCT
 
Template 
TGCAGGTCGACTCTAGAGGATCCCCCCCTGGGTTCTGTCCTGATGCTAACCCTGCCCAAAATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTCAGGT
TAAATAGAAAATGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTTCCATGCCTTATTGGGGGCACAGTTACAAAAT
TATTTACATATCTGAAATACAACTGTAACTGGGGGTACCGAGCTCGAATTCGTAATCATGGTCA
TAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCA
TAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGNGCTAACTCACATTAATTGCGTTGCGCNCAC

Region

Nucleotide Sequences
GenBank Nucleotide CH474009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149314046933Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X400149324470521Rat


Additional Information