D6Rat12 Marker Search Result - Rat Genome Database

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Marker: D6Rat12

Symbol: D6Rat12
Previously known as: R0046-A01; oxsts7256; R046-A01; 
RGD ID: 36990
Expected Size: 151 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26109,394,713 - 109,394,864 (+)MAPPERmRatBN7.2
Rnor_6.06114,203,334 - 114,203,484NCBIRnor6.0
Rnor_5.06123,469,988 - 123,470,138UniSTSRnor5.0
RGSC_v3.46114,032,010 - 114,032,160UniSTSRGSC3.4
RGSC_v3.46114,031,923 - 114,032,192RGDRGSC3.4
Celera6107,165,850 - 107,166,000UniSTS
RGSC_v3.16114,035,541 - 114,035,691RGD
RH 3.4 Map6752.5RGD
RH 3.4 Map6752.5UniSTS
RH 2.0 Map6960.9RGD
SHRSP x BN Map666.8998RGD
FHH x ACI Map673.61RGD
Cytogenetic Map6q31UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Uae14   Uae2   Uae22   Glom8   Uae37  
Genes:   LOC366699   LOC100911037  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GCAAACTCCCTGATCCTCTG
Reverse Primer TCAAATAGAAGAGTGGGGGC
 
Template 
TGCGGTCCGACNCAGAGGATCCCCCTACTGAAAATGAGGGAAAAATACCAACTACACAGAGGCT
ATGTCAAATAAATCTTCTTTGCATTAGGATGTGGTAAGTGCAAGTTTCAAATAGAAGAGTGGGG
GCTACTTAAAAAATTTACCTATAGACAACCTATAAAAGACACACACACACACACACACACACAC
AGATAGAAGCAACAGAAGGAAGATTGTAACAGCCAGAGGATCAGGGAGTTTGCTTTGGAACTGT
GCCTTTTAGTAATGTCAAAAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCC
TGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAA

Region

Nucleotide Sequences
GenBank Nucleotide CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303255 UniSTS
  100911037 UniSTS
  366699 UniSTS
  387429 UniSTS
  387439 UniSTS
  408130 UniSTS
  444905 UniSTS