D2Rat88 Marker Search Result - Rat Genome Database

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Marker: D2Rat88

Symbol: D2Rat88
Previously known as: oxsts6910; R0042-C02; 
RGD ID: 36876
Expected Size: 140 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22213,594,355 - 213,594,495 (+)MAPPERmRatBN7.2
Rnor_6.02228,984,526 - 228,984,665NCBIRnor6.0
Rnor_5.02248,335,840 - 248,335,979UniSTSRnor5.0
RGSC_v3.42222,281,737 - 222,281,876UniSTSRGSC3.4
RGSC_v3.42222,281,658 - 222,281,918RGDRGSC3.4
Celera2205,951,680 - 205,951,819UniSTS
RGSC_v3.12222,268,417 - 222,268,556RGD
RH 3.4 Map21546.5UniSTS
RH 3.4 Map21546.5RGD
SHRSP x BN Map284.0698UniSTS
SHRSP x BN Map284.0698RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Ppulsi1   Iddm26   Iddm33   Activ3  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TTCCTGCATCTCCAGCAATA
Reverse Primer TGGGTCACTTTTCCCCATTA
 
Template 
CAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCAGTAAATTACCAAGATAT
AAACATTACTGGATCTTTACTAGGGTGTTTATTTGCTTATTGTCATGGCATATATAATTGGGTC
ACTTTTCCCCATTACACGGTGTCTCCCAGACTCCCTTTAAATTCATGTTATTCACTCATACACA
CCACACACACACACACACACACACACACACACACAGGCTATTGCTGGAGATGCAGGAATCAAAC
TTGTTGAGAGAAATGTTTCAGAATTTAGCTCCTAGG

Region

Nucleotide Sequences
GenBank Nucleotide CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303013 UniSTS
  100303159 UniSTS
  100303262 UniSTS
  100303287 UniSTS