D8Rat43 Marker Search Result - Rat Genome Database

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Marker: D8Rat43

Symbol: D8Rat43
Previously known as: R0042-B11; oxsts7447; R042-B11; 
RGD ID: 36872
Expected Size: 112 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2848,630,131 - 48,630,243 (+)MAPPERmRatBN7.2
Rnor_6.0852,644,745 - 52,644,856NCBIRnor6.0
Rnor_5.0851,241,951 - 51,242,062UniSTSRnor5.0
RGSC_v3.4851,577,566 - 51,577,678RGDRGSC3.4
RGSC_v3.4851,577,567 - 51,577,678UniSTSRGSC3.4
Celera848,191,252 - 48,191,363UniSTS
RGSC_v3.1851,596,621 - 51,596,732RGD
RH 3.4 Map8507.0UniSTS
RH 3.4 Map8507.0RGD
RH 2.0 Map8378.2RGD
SHRSP x BN Map836.87RGD
FHH x ACI Map843.6199RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Stl20   Gluco43   Insul13  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GGATGCTGTTAGTAGCCCTGA
Reverse Primer AGTGCTAAGCAAAGGTCCCA
 
Template 
AGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTCAGAGGATCCCCTGGAAAACACACACATACA
CACACACACACACACACACACACACACACACACACACACACCCTGAATTCAGAAGTGCTAAGCA
AAGGTCCCACCACCACAAGAAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGAGAC
AGAGAGACAGAGAGACAGAGAGACAGAGAGTCAGGGCTACTAACAGCATCCTAGTAGGGACAAA
TGTTTTTTGTCAAAGAGAAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCT
GTGTGAAATTGTTATCCGCTCGCAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAG
CCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCA
GTCGG

Region

Nucleotide Sequences
GenBank Nucleotide CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303218 UniSTS
  100303426 UniSTS
  100303622 UniSTS