D2Rat49 Marker Search Result - Rat Genome Database

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Marker: D2Rat49

Symbol: D2Rat49
Previously known as: R0035-A03; oxsts6868; R035-A03; 
RGD ID: 36323
Expected Size: 131 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22190,053,509 - 190,053,640 (+)MAPPERmRatBN7.2
Rnor_6.02205,037,597 - 205,037,727NCBIRnor6.0
Rnor_5.02224,467,722 - 224,467,852UniSTSRnor5.0
RGSC_v3.42197,733,620 - 197,733,750UniSTSRGSC3.4
RGSC_v3.42197,733,619 - 197,733,750RGDRGSC3.4
Celera2182,474,285 - 182,474,415UniSTS
RGSC_v3.12197,696,374 - 197,696,504RGD
RH 3.4 Map21299.2RGD
RH 3.4 Map21299.2UniSTS
RH 2.0 Map2979.7RGD
SHRSP x BN Map274.0098RGD
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ATCCCTGGTGAGGGAAAAGT
Reverse Primer CTTATTGTATTTACATGTGCACGC
 
Template 
TGCGGTCGACTCTAGAGGATCCCCCTCAGTGGTAGAGCGCTTGCCTAGCAAATGAAAGGCCCTG
GGTTCGGTCCCCAGTTCCGGAAAAAAAAAGAAAAAAAAGATTAAATGTGCAGAAAATAATTATG
TATGCTTCTATTTATAGGAAAGCATAAAAACAGTGTGTCAAATTTGGAAAAATAATCATCCCTG
GTGAGGGAAAAGTTATGGGAAGTGTACTCAGAAGGACTGGTTGAAAATGGTTCAGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCACATGTAAATACAATAAGTAATACTAAA
ATATAAAAACCTATATACATTGTTAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTG
NCTCCTCCGTGAAATTGTTNTCCCGCGCAGNNTTCCNCACAACATACGAGCCGGAAGCATAAAG
TGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCG
CTTTCCAGTCGGGAAACTGTCGTGCCAGCTGCATTATGAATCGGCCAACGCGCGGGGAGAGGCG
GTTTCGTATTGNGCGCCAGGTGGTTTTTCTTNCACAGTGAGCGGGCACAGTGATTGCCTCACGC
TNCCNGANGANTC

Region

Nucleotide Sequences
GenBank Nucleotide CH474015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information