D19Rat13 Marker Search Result - Rat Genome Database

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Marker: D19Rat13

Symbol: D19Rat13
Previously known as: oxsts6490; R031-C10; R0031-C10; 
RGD ID: 36165
Expected Size: 227 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21923,069,265 - 23,069,484 (-)MAPPERmRatBN7.2
Rnor_6.01926,201,726 - 26,201,944NCBIRnor6.0
Rnor_5.01937,177,349 - 37,177,567UniSTSRnor5.0
RGSC_v3.41924,725,428 - 24,725,843RGDRGSC3.4
RGSC_v3.41924,725,553 - 24,725,771UniSTSRGSC3.4
Celera1922,627,236 - 22,627,454UniSTS
RGSC_v3.11924,730,254 - 24,730,669RGD
FHH x ACI Map1921.7099RGD
FHH x ACI Map1921.7099UniSTS
Cytogenetic Map19q11UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Niddm38   Slep13   Bw152  
Genes:   Man2b1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GTGTCCTGGACTGTCCCTGT
Reverse Primer GACTCAAACCCAAGCCTTGT
 
Template 
GCATGCTGCAGGTCGACTCTAGAGGATCCCCCTGGCTTTGAACTTCTGCTCCTCAGTCCTCCAT
TTTCTGAGTGCTGGGAAGGTTGAGTCCCGCCATTCCTGGGACTCAAACCCAAGCCTTGTTATAT
GCACTCTTACTGACTGAGCAGTATCCCCATACATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGGTGTTTTGTTTGCTTGTATTGGGGATCTAACCTGAGGTCTT
GAGCATGCTAGTCTAGTACTCTCACACTGAACTCCATCCTTAGGCCCCCACATTTGGCACAGGG
ACAGTCCAGGACACTCTGGCCTGAGAGTTACCTTTTTATCTACAGAAAAAGTATTACCGAACCA
ACCACACCGTGATGACCATGGGCTCAGACTTCCAGTATGAGAATGCCAACATGTGGTTCAAAAA
CATGGACAAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTG
TTATCGCTCACAATNCACACAACATAGAGCGGAGCATAAGTGTAANCTGGGGTGCTNTGAGTGA
GTACTCAANATTGCGTGGCCATGNCGTTTCNTCGGGANCTTGT

Region

Nucleotide Sequences
GenBank Nucleotide CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 361378 UniSTS
  387379 UniSTS